Variant report

Variant	rs57671584
Chromosome Location	chr12:740023-740024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MEF2A	chr12:739163-740230	GM12878	blood:	n/a	n/a
2	POLR2A	chr12:739246-740421	GM12878	blood:	n/a	n/a
3	POLR2A	chr12:739640-740510	GM18951	blood:	n/a	n/a
4	POLR2A	chr12:739711-740345	HL-60	blood:	n/a	n/a
5	STAT5A	chr12:739811-740313	GM12878	blood:	n/a	chr12:740179-740191 chr12:739910-739918
6	YY1	chr12:739797-740238	NT2-D1	testis:	n/a	chr12:739948-739957
7	RAD21	chr12:739699-740210	H1-hESC	embryonic stem cell:	n/a	chr12:739885-739899
8	POLR2A	chr12:739658-740261	GM12878	blood:	n/a	n/a
9	POLR2A	chr12:739126-742211	GM12891	blood:	n/a	n/a
10	TBL1XR1	chr12:739835-740244	GM12878	blood:	n/a	n/a
11	TBP	chr12:739795-740075	H1-hESC	embryonic stem cell:	n/a	n/a
12	GABPA	chr12:739780-740141	H1-hESC	embryonic stem cell:	n/a	n/a
13	YY1	chr12:739844-740186	GM12892	blood:	n/a	chr12:739948-739957
14	POU2F2	chr12:739602-740500	GM12891	blood:	n/a	chr12:739865-739878 chr12:740348-740358 chr12:739867-739877 chr12:740114-740135 chr12:740341-740362 chr12:739989-740001 chr12:739868-739875 chr12:739867-739877 chr12:740343-740357 chr12:739867-739876
15	POLR2A	chr12:739644-740510	GM12892	blood:	n/a	n/a
16	YY1	chr12:739767-740324	H1-hESC	embryonic stem cell:	n/a	chr12:739948-739957
17	MYC	chr12:739743-740386	NB4	blood:	n/a	n/a
18	ZNF384	chr12:739798-740198	GM12878	blood:	n/a	n/a
19	POLR2A	chr12:739618-740292	GM12878	blood:	n/a	n/a
20	REST	chr12:739711-740333	HL-60	blood:	n/a	n/a
21	SPI1	chr12:739754-740141	HL-60	blood:	n/a	n/a
22	BHLHE40	chr12:739686-740235	GM12878	blood:	n/a	n/a
23	TAF1	chr12:739602-740252	GM12878	blood:	n/a	n/a
24	NFIC	chr12:739667-740185	GM12878	blood:	n/a	n/a
25	SPI1	chr12:739780-740069	GM12878	blood:	n/a	n/a
26	MTA3	chr12:739613-740553	GM12878	blood:	n/a	n/a
27	POLR2A	chr12:739563-740585	GM19099	blood:	n/a	n/a
28	POLR2A	chr12:739672-740480	NB4	blood:	n/a	n/a
29	YY1	chr12:739782-740381	H1-hESC	embryonic stem cell:	n/a	chr12:739948-739957
30	ELK1	chr12:739820-740165	GM12878	blood:	n/a	n/a
31	YY1	chr12:739634-740069	K562	blood:	n/a	chr12:739948-739957
32	CHD1	chr12:740002-740147	H1-hESC	embryonic stem cell:	n/a	chr12:740078-740088 chr12:740034-740044
33	NFATC1	chr12:739879-740370	GM12878	blood:	n/a	n/a
34	USF2	chr12:739828-740168	GM12878	blood:	n/a	n/a
35	MXI1	chr12:739712-740194	GM12878	blood:	n/a	n/a
36	TAF1	chr12:739765-740155	GM12892	blood:	n/a	n/a
37	POLR2A	chr12:739640-740542	GM18505	blood:	n/a	n/a
38	MTA3	chr12:739820-740247	GM12878	blood:	n/a	n/a
39	PAX5	chr12:739733-740056	GM12892	blood:	n/a	n/a
40	POLR2A	chr12:739622-741825	GM19193	blood:	n/a	n/a
41	ATF2	chr12:739681-740480	GM12878	blood:	n/a	n/a
42	MAX	chr12:739786-740238	H1-hESC	embryonic stem cell:	n/a	n/a
43	RUNX3	chr12:739610-740433	GM12878	blood:	n/a	chr12:740200-740209 chr12:740200-740209
44	TAF1	chr12:739730-740169	GM12892	blood:	n/a	n/a
45	MAX	chr12:739727-740247	NB4	blood:	n/a	n/a
46	POU2F2	chr12:739598-740312	GM12891	blood:	n/a	chr12:739865-739878 chr12:739867-739877 chr12:740114-740135 chr12:739989-740001 chr12:739868-739875 chr12:739867-739877 chr12:739867-739876
47	CHD1	chr12:739865-740447	GM12878	blood:	n/a	chr12:740078-740088 chr12:740034-740044
48	TCF3	chr12:739815-740118	GM12878	blood:	n/a	n/a
49	BCLAF1	chr12:739614-740086	GM12878	blood:	n/a	chr12:739944-739957 chr12:739946-739955
50	PAX5	chr12:739660-740258	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:739980-740030	U87	brain:	n/a
2	chr12:739980-740030	A549	lung:	n/a
3	chr12:739980-740030	HAEpiC	amniotic membrane:	n/a
4	chr12:739980-740030	ProgFib	skin:	n/a
5	chr12:739980-740030	Hepatocyte	liver:	n/a
6	chr12:739980-740030	PANC-1	pancreas:	n/a
7	chr12:739980-740030	H1-hESC	embryonic stem cell:	embryo
8	chr12:739980-740030	HNPCEpiC	eye:	n/a
9	chr12:739980-740030	CMK	blood:	n/a
10	chr12:739980-740030	LNCaP	prostate:	n/a
11	chr12:739980-740030	HEEpiC	esophagus:	n/a
12	chr12:739980-740030	HEK293	kidney:	embryo
13	chr12:739980-740030	HL-60	blood:	n/a
14	chr12:739980-740030	AG09319	gingival:	n/a
15	chr12:739980-740030	ovcar-3	ovarian:	n/a
16	chr12:739980-740030	GM12878	blood:	n/a
17	chr12:739980-740030	SK-N-MC	brain:	n/a
18	chr12:739980-740030	SAEC	small airway:	n/a
19	chr12:739980-740030	AoSMC	blood vessel:	n/a
20	chr12:739980-740030	PFSK-1	brain:	n/a
21	chr12:739980-740030	SK-N-SH	brain:	n/a
22	chr12:739980-740030	HUVEC	blood vessel:	n/a
23	chr12:739980-740030	HCM	heart:	n/a
24	chr12:739980-740030	K562	blood:	n/a
25	chr12:739980-740030	AG10803	skin:	n/a
26	chr12:739980-740030	GM19239	blood:	n/a
27	chr12:739980-740030	NHBE	bronchial:	n/a
28	chr12:739980-740030	HepG2	liver:	n/a
29	chr12:739980-740030	Jurkat	blood:	n/a
30	chr12:739980-740030	AG04449	skin:	fetal
31	chr12:739980-740030	NT2-D1	testis:	n/a
32	chr12:739980-740030	NB4	blood:	n/a
33	chr12:739980-740030	ECC-1	luminal epithelium:	n/a
34	chr12:739980-740030	HPAEpiC	pulmonary alveolar:	n/a
35	chr12:739980-740030	HCPEpiC	choroid plexus:	n/a
36	chr12:739980-740030	HIPEpiC	eye:	n/a
37	chr12:739980-740030	HRCEpiC	kidney:	n/a
38	chr12:739980-740030	IMR90	lung:	fetal
39	chr12:739980-740030	BE2_C	brain:	n/a
40	chr12:739980-740030	RPTEC	kidney:	n/a
41	chr12:739980-740030	NHDF-neo	bronchial:	n/a
42	chr12:739980-740030	AG09309	skin:	n/a
43	chr12:739980-740030	HRPEpiC	eye:	n/a
44	chr12:739980-740030	Hela-S3	cervix:	n/a
45	chr12:739980-740030	SKMC	muscle:	n/a
46	chr12:739980-740030	NH-A	brain:	n/a
47	chr12:739980-740030	GM12891	blood:	n/a
48	chr12:739980-740030	T-47D	breast:	n/a
49	chr12:739980-740030	MCF10A-Er-Src	breast:	n/a
50	chr12:739980-740030	HCF	heart:	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:739334..741511-chr12:860709..863370,3	MCF-7	breast:
2	chr12:738549..743434-chr12:750658..753859,6	MCF-7	breast:
3	chr12:739608..744885-chr12:750259..753818,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177406	TF binding region
ENSG00000177406	CpG island
ENSG00000060237	Chromatin interaction
ENSG00000171840	Chromatin interaction
ENSG00000177406	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11064285	1.00[EUR][1000 genomes]
rs11064311	1.00[EUR][1000 genomes]
rs11064319	1.00[EUR][1000 genomes]
rs12306857	1.00[EUR][1000 genomes]
rs4600275	1.00[EUR][1000 genomes]
rs57003899	1.00[AMR][1000 genomes]
rs57724327	1.00[AMR][1000 genomes]
rs57756520	1.00[EUR][1000 genomes]
rs7299915	1.00[AMR][1000 genomes]
rs73596291	1.00[AMR][1000 genomes]
rs73596296	1.00[AMR][1000 genomes]
rs73596297	1.00[AMR][1000 genomes]
rs73598116	1.00[EUR][1000 genomes]
rs73598117	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041574	chr12:282465-812000	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv541305	chr12:282465-1016828	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv869390	chr12:282465-1045994	Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1049944	chr12:282465-1232077	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv541306	chr12:282465-1232077	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1050781	chr12:321353-783899	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv1040849	chr12:321619-771493	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	nsv541322	chr12:321619-771493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	nsv1035679	chr12:321619-781558	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	nsv1053519	chr12:321619-828175	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
11	nsv1044433	chr12:321619-1065402	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
12	nsv541323	chr12:321619-1065402	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
13	esv2759875	chr12:335010-990544	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
14	nsv1045638	chr12:349031-893536	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
15	nsv541325	chr12:349031-893536	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
16	nsv949469	chr12:380411-1122450	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
17	nsv1050226	chr12:441032-743195	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
18	esv2758290	chr12:457433-990544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
19	nsv949226	chr12:493900-814882	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
20	nsv898567	chr12:547683-863517	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
21	nsv898568	chr12:547683-969800	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
22	nsv898569	chr12:573870-776471	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
23	nsv491937	chr12:574727-835424	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
24	nsv1040579	chr12:575633-761560	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
25	nsv1049625	chr12:595867-840090	Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
26	nsv541331	chr12:595867-840090	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
27	nsv1038199	chr12:623813-742216	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
28	nsv541333	chr12:623813-742216	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
29	nsv468951	chr12:624947-783484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
30	nsv470254	chr12:624947-783484	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
31	nsv556885	chr12:624947-783484	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
32	nsv556887	chr12:632240-867504	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
33	nsv1042529	chr12:634019-776371	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
34	nsv556890	chr12:662448-1100555	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
35	nsv1049389	chr12:673428-778337	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
36	nsv541335	chr12:673428-778337	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
37	nsv556892	chr12:673515-1210884	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
38	nsv1045227	chr12:681554-786238	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
39	nsv1049913	chr12:682848-781558	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
40	nsv1044022	chr12:683606-783899	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
41	nsv898573	chr12:690473-803488	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
42	nsv1040089	chr12:697209-778337	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
43	nsv541337	chr12:697209-778337	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
44	nsv1053080	chr12:706423-781558	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
45	nsv1048965	chr12:706423-803160	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
46	nsv898574	chr12:708597-796131	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
47	nsv1051590	chr12:722215-974773	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
48	nsv541338	chr12:722215-974773	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
49	esv2755536	chr12:736714-768033	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
50	esv1802746	chr12:737230-752482	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:730400-741400	Weak transcription	Brain Substantia Nigra	brain
2	chr12:731000-741400	Weak transcription	Brain Angular Gyrus	brain
3	chr12:732600-741000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:733000-750600	Weak transcription	Spleen	Spleen
5	chr12:733600-741600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr12:735800-741000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr12:736600-740800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:736800-742200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:737000-741200	Weak transcription	Pancreas	Pancrea
10	chr12:737200-740600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:737400-741200	Weak transcription	Brain Anterior Caudate	brain
12	chr12:737600-740200	Weak transcription	Stomach Mucosa	stomach
13	chr12:737800-740800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:737800-741000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:737800-741000	Weak transcription	Fetal Heart	heart
16	chr12:737800-741200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:738000-740800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:738000-740800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr12:738000-740800	Weak transcription	HMEC	breast
20	chr12:738000-740800	Weak transcription	NHEK	skin
21	chr12:738000-741000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr12:738600-741000	Weak transcription	Psoas Muscle	Psoas
23	chr12:738600-741200	Weak transcription	Right Atrium	heart
24	chr12:738600-741400	Weak transcription	Esophagus	oesophagus
25	chr12:738600-741400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr12:739000-741400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr12:739200-740200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:739200-740200	Enhancers	Brain Hippocampus Middle	brain
29	chr12:739200-740400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr12:739200-740400	Flanking Active TSS	GM12878-XiMat	blood
31	chr12:739200-740600	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr12:739200-740600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr12:739200-740600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr12:739200-740600	Active TSS	Rectal Smooth Muscle	rectum
35	chr12:739200-740800	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr12:739200-740800	Enhancers	A549	lung
37	chr12:739200-741000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr12:739200-741000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr12:739200-741200	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr12:739200-742200	Enhancers	NHDF-Ad	bronchial
41	chr12:739200-742600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr12:739400-740200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr12:739400-740400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr12:739400-740600	Active TSS	Primary T cells from cord blood	blood
45	chr12:739400-740600	Active TSS	Primary T cells fromperipheralblood	blood
46	chr12:739400-740600	Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr12:739400-740600	Flanking Active TSS	Fetal Thymus	thymus
48	chr12:739400-740600	Weak transcription	HSMM	muscle
49	chr12:739400-740800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr12:739600-740400	Active TSS	iPS-15b Cell Line	embryonic stem cell

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