Variant report

Variant	rs576779683
Chromosome Location	chr6:54103337-54103338
allele	-/TC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1020961	chr6:54101801-54133709	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54097200-54103400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:54101000-54119800	Weak transcription	Right Ventricle	heart
3	chr6:54101400-54120800	Weak transcription	Psoas Muscle	Psoas
4	chr6:54102000-54104200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:54102200-54119800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:54102600-54108400	Weak transcription	Left Ventricle	heart
7	chr6:54102800-54104000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr6:54103000-54103400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:54103000-54104000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:54103000-54104000	Enhancers	Adipose Nuclei	Adipose
11	chr6:54103000-54104000	Enhancers	Colon Smooth Muscle	Colon
12	chr6:54103000-54104000	Enhancers	Fetal Heart	heart
13	chr6:54103000-54104000	Enhancers	Fetal Lung	lung
14	chr6:54103000-54104000	Enhancers	NHDF-Ad	bronchial
15	chr6:54103200-54103600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:54103200-54103800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:54103200-54103800	Enhancers	HUVEC	blood vessel
18	chr6:54103200-54104000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:54103200-54104000	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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