Variant report

Variant	rs57684116
Chromosome Location	chr9:101087906-101087907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61650894	1.00[AMR][1000 genomes]
rs73492812	1.00[AMR][1000 genomes]
rs73657138	1.00[AMR][1000 genomes]
rs73657139	0.93[AFR][1000 genomes]
rs73657140	1.00[AMR][1000 genomes]
rs73657150	1.00[AMR][1000 genomes]
rs73657153	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101078400-101088800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101085600-101089000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:101085600-101093800	Weak transcription	Lung	lung
4	chr9:101086000-101089600	Weak transcription	Right Ventricle	heart
5	chr9:101086800-101091400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:101087000-101088000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:101087200-101090400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:101087200-101090400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:101087200-101091200	Weak transcription	NHLF	lung
10	chr9:101087200-101093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:101087200-101094000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:101087400-101091200	Weak transcription	HMEC	breast
13	chr9:101087400-101091200	Weak transcription	NHEK	skin
14	chr9:101087400-101091400	Weak transcription	NHDF-Ad	bronchial
15	chr9:101087400-101091600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:101087400-101091600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:101087400-101096000	Weak transcription	Osteobl	bone
18	chr9:101087400-101096400	Weak transcription	NH-A	brain
19	chr9:101087600-101088600	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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