Variant report

Variant	rs576859975
Chromosome Location	chr10:43900611-43900612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43857152..43860399-chr10:43897567..43900656,3	MCF-7	breast:
2	chr10:43899308..43901344-chr10:43930601..43933221,2	MCF-7	breast:
3	chr10:43853717..43856256-chr10:43898342..43901234,2	MCF-7	breast:
4	chr10:43899870..43905980-chr10:43953401..43957689,7	MCF-7	breast:
5	chr10:43887055..43906178-chr10:43946385..43955803,85	K562	blood:

Variant related genes	Relation type
ENSG00000243660	Chromatin interaction
ENSG00000252532	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv825354	chr10:43883418-43949936	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv825355	chr10:43890579-43923802	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv825356	chr10:43893080-43946515	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
8	esv6684	chr10:43900443-43900657	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43893200-43901600	Weak transcription	HSMMtube	muscle
2	chr10:43893400-43901400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:43893600-43901200	Weak transcription	Brain Angular Gyrus	brain
4	chr10:43893600-43902200	Weak transcription	Aorta	Aorta
5	chr10:43894000-43901200	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:43894000-43901200	Genic enhancers	Fetal Intestine Small	intestine
7	chr10:43894000-43901400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:43894200-43901200	Weak transcription	Brain Anterior Caudate	brain
9	chr10:43894200-43901400	Weak transcription	Fetal Brain Male	brain
10	chr10:43894400-43901200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr10:43894400-43901200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:43894400-43901600	Weak transcription	Brain Germinal Matrix	brain
13	chr10:43894800-43901400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:43894800-43901600	Weak transcription	Fetal Brain Female	brain
15	chr10:43895000-43901200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:43895000-43901200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:43895200-43901200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:43895200-43901600	Weak transcription	Fetal Kidney	kidney
19	chr10:43895600-43900800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:43896600-43901200	Enhancers	Psoas Muscle	Psoas
21	chr10:43896800-43901400	Enhancers	Stomach Mucosa	stomach
22	chr10:43897000-43901400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:43897000-43902400	Transcr. at gene 5' and 3'	Dnd41	blood
24	chr10:43897400-43901400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr10:43897400-43901800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:43898000-43900800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:43898000-43901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr10:43898200-43901000	Weak transcription	Fetal Heart	heart
29	chr10:43898400-43900800	Transcr. at gene 5' and 3'	Hela-S3	cervix
30	chr10:43898400-43901200	Enhancers	Colonic Mucosa	Colon
31	chr10:43898600-43901200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:43898600-43901400	Enhancers	Placenta	Placenta
33	chr10:43898800-43901400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:43899200-43901200	Enhancers	Osteobl	bone
35	chr10:43899200-43901400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:43899200-43901400	Enhancers	Adipose Nuclei	Adipose
37	chr10:43899200-43902000	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr10:43899400-43900800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr10:43899400-43900800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:43899400-43900800	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr10:43899400-43901000	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:43899400-43901200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:43899400-43901200	Weak transcription	Brain Substantia Nigra	brain
44	chr10:43899400-43901200	Enhancers	HUVEC	blood vessel
45	chr10:43899400-43901400	Enhancers	Ovary	ovary
46	chr10:43899400-43901600	Enhancers	Gastric	stomach
47	chr10:43899400-43902600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr10:43899600-43900800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:43899600-43900800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:43899600-43901200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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