Variant report

Variant	rs576862
Chromosome Location	chr6:11600883-11600884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11599973..11602605-chr6:11612731..11615608,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs295062	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs295063	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs295064	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs502903	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs554484	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555352	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11593200-11605400	Weak transcription	Right Atrium	heart
2	chr6:11593600-11604600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:11593800-11609800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:11595200-11602400	Weak transcription	HSMMtube	muscle
5	chr6:11597400-11606600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:11599000-11602600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:11599200-11603400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:11599600-11602000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:11599600-11602200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:11599600-11602200	Weak transcription	A549	lung
11	chr6:11599600-11602400	Weak transcription	HSMM	muscle
12	chr6:11599800-11603000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:11599800-11604400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:11599800-11604400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:11599800-11606600	Weak transcription	Fetal Intestine Large	intestine
16	chr6:11600000-11601600	Enhancers	Ovary	ovary
17	chr6:11600000-11604400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:11600000-11605400	Weak transcription	Placenta	Placenta
19	chr6:11600000-11605400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:11600800-11601000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:11600800-11601200	Enhancers	Fetal Muscle Leg	muscle
22	chr6:11600800-11606400	Weak transcription	Aorta	Aorta

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