Variant report

Variant	rs295064
Chromosome Location	chr6:11597295-11597296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11591438..11594542-chr6:11595912..11598544,3	K562	blood:
2	chr6:11597068..11598753-chr6:11607542..11609387,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM170B-3	chr6:11597288-11597341	l_3112_chr6:11525493-11597341_testes

Variant related genes	Relation type
ENSG00000271897	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10947398	0.87[ASN][1000 genomes]
rs11752836	0.81[ASN][1000 genomes]
rs11755780	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12192094	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12194771	0.87[ASN][1000 genomes]
rs12198765	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12198774	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12198950	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12200454	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12528839	0.81[ASN][1000 genomes]
rs145176	0.87[ASN][1000 genomes]
rs2025184	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs2025185	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs211510	0.97[ASN][1000 genomes]
rs2758307	0.84[ASN][1000 genomes]
rs2807964	0.84[ASN][1000 genomes]
rs295051	0.91[ASN][1000 genomes]
rs295059	0.98[ASN][1000 genomes]
rs295060	0.99[ASN][1000 genomes]
rs295061	0.97[ASN][1000 genomes]
rs295062	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs295063	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857556	0.87[ASN][1000 genomes]
rs4711306	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs4713594	0.83[JPT][hapmap]
rs4713618	0.86[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs502903	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs505685	0.85[ASN][1000 genomes]
rs554484	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs555352	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs576862	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs588062	0.87[JPT][hapmap]
rs595877	0.86[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs616729	0.84[ASN][1000 genomes]
rs651001	0.88[ASN][1000 genomes]
rs681483	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs6901328	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs6908807	0.87[ASN][1000 genomes]
rs6916089	0.83[ASN][1000 genomes]
rs6930371	0.85[ASN][1000 genomes]
rs6932324	0.87[ASN][1000 genomes]
rs6941011	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs7749662	0.92[ASN][1000 genomes]
rs7770004	0.81[ASN][1000 genomes]
rs9348895	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs9348896	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs9357154	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs9366806	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs9394102	0.91[JPT][hapmap]
rs9394117	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs9394146	0.87[ASN][1000 genomes]
rs9394154	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11593000-11598600	Weak transcription	A549	lung
2	chr6:11593200-11600800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:11593200-11605400	Weak transcription	Right Atrium	heart
4	chr6:11593600-11604600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:11593800-11597600	Weak transcription	Ovary	ovary
6	chr6:11593800-11609800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:11594800-11598000	Weak transcription	Placenta	Placenta
8	chr6:11595200-11598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:11595200-11602400	Weak transcription	HSMMtube	muscle
10	chr6:11597000-11597400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr6:11597200-11597400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:11597200-11597400	Genic enhancers	HSMM	muscle

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