Variant report

Variant	rs211510
Chromosome Location	chr6:11593985-11593986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10947398	0.88[ASN][1000 genomes]
rs11752836	0.83[ASN][1000 genomes]
rs12194771	0.88[ASN][1000 genomes]
rs12528839	0.83[ASN][1000 genomes]
rs145176	0.88[ASN][1000 genomes]
rs2758307	0.85[ASN][1000 genomes]
rs2807964	0.85[ASN][1000 genomes]
rs295051	0.91[ASN][1000 genomes]
rs295059	0.99[ASN][1000 genomes]
rs295060	0.99[ASN][1000 genomes]
rs295061	0.97[ASN][1000 genomes]
rs295062	0.97[ASN][1000 genomes]
rs295063	0.97[ASN][1000 genomes]
rs295064	0.97[ASN][1000 genomes]
rs3857556	0.88[ASN][1000 genomes]
rs4713618	0.88[ASN][1000 genomes]
rs505685	0.86[ASN][1000 genomes]
rs595877	0.91[ASN][1000 genomes]
rs616729	0.85[ASN][1000 genomes]
rs651001	0.90[ASN][1000 genomes]
rs6908807	0.88[ASN][1000 genomes]
rs6916089	0.84[ASN][1000 genomes]
rs6930371	0.86[ASN][1000 genomes]
rs6932324	0.88[ASN][1000 genomes]
rs7749662	0.92[ASN][1000 genomes]
rs7770004	0.83[ASN][1000 genomes]
rs9394146	0.88[ASN][1000 genomes]
rs9394154	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417839	chr6:11593829-11594072	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11591400-11596600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11592800-11594800	Enhancers	Placenta	Placenta
3	chr6:11592800-11595200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:11593000-11598600	Weak transcription	A549	lung
5	chr6:11593200-11596000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:11593200-11597000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:11593200-11600800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:11593200-11605400	Weak transcription	Right Atrium	heart
9	chr6:11593600-11594800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:11593600-11595200	Strong transcription	HSMM	muscle
11	chr6:11593600-11604600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:11593800-11594200	Weak transcription	HSMMtube	muscle
13	chr6:11593800-11597600	Weak transcription	Ovary	ovary
14	chr6:11593800-11609800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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