Variant report

Variant	rs295059
Chromosome Location	chr6:11593524-11593525
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11591438..11594542-chr6:11595912..11598544,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10947398	0.88[ASN][1000 genomes]
rs11752836	0.83[ASN][1000 genomes]
rs11755780	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12192094	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12194771	0.88[ASN][1000 genomes]
rs12198765	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12198774	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12198950	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12200454	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12528839	0.83[ASN][1000 genomes]
rs145176	0.88[ASN][1000 genomes]
rs2025184	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2025185	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs211510	0.99[ASN][1000 genomes]
rs2758307	0.86[ASN][1000 genomes]
rs2807964	0.86[ASN][1000 genomes]
rs295051	0.92[ASN][1000 genomes]
rs295060	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs295061	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs295062	0.98[ASN][1000 genomes]
rs295063	0.98[ASN][1000 genomes]
rs295064	0.98[ASN][1000 genomes]
rs3857556	0.89[ASN][1000 genomes]
rs4711306	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4713594	0.82[JPT][hapmap]
rs4713618	0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs505685	0.87[ASN][1000 genomes]
rs588062	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs595877	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs616729	0.86[ASN][1000 genomes]
rs651001	0.90[ASN][1000 genomes]
rs681483	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6901328	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs6908807	0.88[ASN][1000 genomes]
rs6916089	0.85[ASN][1000 genomes]
rs6930371	0.87[ASN][1000 genomes]
rs6932324	0.88[ASN][1000 genomes]
rs6941011	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7749662	0.93[ASN][1000 genomes]
rs7770004	0.83[ASN][1000 genomes]
rs9348895	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9348896	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9357154	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9366806	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs9394102	0.91[JPT][hapmap]
rs9394117	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9394146	0.89[ASN][1000 genomes]
rs9394154	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11587400-11593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:11591400-11596600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11592000-11593600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:11592600-11593800	Enhancers	Ovary	ovary
5	chr6:11592800-11594800	Enhancers	Placenta	Placenta
6	chr6:11592800-11595200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:11593000-11598600	Weak transcription	A549	lung
8	chr6:11593200-11596000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:11593200-11597000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:11593200-11600800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:11593200-11605400	Weak transcription	Right Atrium	heart
12	chr6:11593400-11593600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:11593400-11593600	Weak transcription	HSMM	muscle
14	chr6:11593400-11593800	Enhancers	HSMMtube	muscle

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