Variant report

Variant	rs9394102
Chromosome Location	chr6:11472845-11472846
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11232260..11235234-chr6:11472256..11473843,2	MCF-7	breast:
2	chr6:11468861..11470541-chr6:11472412..11474391,2	MCF-7	breast:
3	chr6:11221506..11223468-chr6:11470746..11472901,2	MCF-7	breast:
4	chr6:11469627..11471463-chr6:11472358..11475201,2	K562	blood:
5	chr6:11460027..11462482-chr6:11472163..11473735,2	MCF-7	breast:
6	chr6:11472497..11474749-chr6:11475109..11477785,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10947398	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11752836	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11755780	0.89[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs12192094	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs12194771	0.81[ASN][1000 genomes]
rs12198765	0.87[CEU][hapmap];0.91[JPT][hapmap]
rs12198774	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs12198950	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs12200454	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs12528839	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs145176	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2025184	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs2025185	0.91[JPT][hapmap]
rs2327440	0.84[CEU][hapmap]
rs2758307	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2807964	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3857556	0.80[ASN][1000 genomes]
rs4711306	0.88[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs4713593	0.83[AMR][1000 genomes]
rs4713594	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs4713618	0.92[CEU][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs505685	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs588062	0.95[JPT][hapmap]
rs595877	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs61570488	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs616729	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67846147	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs681483	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs6899820	0.88[ASN][1000 genomes]
rs6901328	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs6904400	0.97[ASN][1000 genomes]
rs6908807	0.81[ASN][1000 genomes]
rs6913697	0.84[AMR][1000 genomes]
rs6914208	0.84[AMR][1000 genomes]
rs6914420	0.84[AMR][1000 genomes]
rs6915153	0.84[AMR][1000 genomes]
rs6915366	0.84[AMR][1000 genomes]
rs6916089	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6930371	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6932324	0.81[ASN][1000 genomes]
rs6936326	0.81[CEU][hapmap]
rs6940859	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6941011	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs6941700	0.84[AMR][1000 genomes]
rs7770004	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348892	0.84[AMR][1000 genomes]
rs9348895	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs9348896	0.88[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs9357150	0.99[ASN][1000 genomes]
rs9357154	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs9366805	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9366806	0.91[JPT][hapmap]
rs9380310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394117	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs9394146	0.80[ASN][1000 genomes]
rs9394154	0.85[CEU][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11465800-11473200	Weak transcription	HepG2	liver
2	chr6:11469200-11473000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:11470200-11479200	Weak transcription	Fetal Kidney	kidney
4	chr6:11470400-11473200	Weak transcription	GM12878-XiMat	blood
5	chr6:11471800-11475200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:11472200-11473200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:11472400-11473200	Enhancers	Adipose Nuclei	Adipose
8	chr6:11472600-11474400	Weak transcription	Lung	lung

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