Variant report

Variant	rs505685
Chromosome Location	chr6:11523886-11523887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10807114	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10807115	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1094382	0.82[AMR][1000 genomes]
rs10947398	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11751884	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11752836	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755780	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11756371	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12192094	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12194771	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12198765	0.83[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12198774	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12198950	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12200391	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12200454	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12528839	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs145176	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025184	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2025185	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs211510	0.86[ASN][1000 genomes]
rs2327440	0.81[CEU][hapmap];0.91[MEX][hapmap]
rs2758307	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2807964	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs295051	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs295059	0.87[ASN][1000 genomes]
rs295060	0.86[ASN][1000 genomes]
rs295061	0.86[ASN][1000 genomes]
rs295062	0.85[ASN][1000 genomes]
rs295063	0.85[ASN][1000 genomes]
rs295064	0.85[ASN][1000 genomes]
rs3857556	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711306	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4713593	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713594	0.84[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713618	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs487729	0.81[ASN][1000 genomes]
rs493183	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs505839	0.81[ASN][1000 genomes]
rs528012	0.81[ASN][1000 genomes]
rs528087	0.81[ASN][1000 genomes]
rs568867	0.81[ASN][1000 genomes]
rs570714	0.81[ASN][1000 genomes]
rs575164	0.81[ASN][1000 genomes]
rs586117	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs588062	0.90[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs588948	0.81[ASN][1000 genomes]
rs594164	0.88[ASN][1000 genomes]
rs595877	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs609135	0.81[ASN][1000 genomes]
rs61570488	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs616729	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs617157	0.81[ASN][1000 genomes]
rs618573	0.80[ASN][1000 genomes]
rs620867	0.81[ASN][1000 genomes]
rs623024	0.81[ASN][1000 genomes]
rs651001	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs681483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6901328	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6907796	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6908807	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6913697	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6914208	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6914420	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6915153	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6915366	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6916089	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930371	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932324	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6936326	0.84[CEU][hapmap]
rs6940859	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6941011	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6941700	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7749662	0.82[ASN][1000 genomes]
rs7770004	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9348892	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348895	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9348896	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357154	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9366805	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366806	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9380310	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9380311	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380315	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394102	0.96[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394117	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394119	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs9394146	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394154	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11518600-11528200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:11520000-11525600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:11520200-11528000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:11521200-11525200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:11522000-11536400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:11522800-11524000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:11522800-11524000	Enhancers	NHDF-Ad	bronchial
8	chr6:11523200-11524000	Enhancers	Esophagus	oesophagus
9	chr6:11523400-11525600	Weak transcription	Adipose Nuclei	Adipose
10	chr6:11523400-11525800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:11523600-11525800	Weak transcription	Fetal Lung	lung
12	chr6:11523800-11525400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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