Variant report

Variant	rs595877
Chromosome Location	chr6:11579093-11579094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10807114	0.81[ASN][1000 genomes]
rs10807115	0.81[ASN][1000 genomes]
rs10947398	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11751884	0.80[ASN][1000 genomes]
rs11752836	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11755780	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs11756371	0.80[ASN][1000 genomes]
rs12192094	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.81[ASN][1000 genomes]
rs12194771	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198765	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12198774	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.81[ASN][1000 genomes]
rs12198950	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.81[ASN][1000 genomes]
rs12200391	0.81[ASN][1000 genomes]
rs12200454	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.81[ASN][1000 genomes]
rs12528839	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs145176	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025184	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.81[ASN][1000 genomes]
rs2025185	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs211510	0.91[ASN][1000 genomes]
rs2327440	0.92[CEU][hapmap]
rs2758307	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2807964	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs295051	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs295059	0.92[ASN][1000 genomes]
rs295060	0.91[ASN][1000 genomes]
rs295061	0.91[ASN][1000 genomes]
rs295062	0.91[ASN][1000 genomes]
rs295063	0.91[ASN][1000 genomes]
rs295064	0.91[ASN][1000 genomes]
rs3857556	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4711306	0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.81[ASN][1000 genomes]
rs4713594	0.85[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs4713618	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs493183	0.84[ASN][1000 genomes]
rs505685	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs538808	0.80[AMR][1000 genomes]
rs586117	0.84[ASN][1000 genomes]
rs588062	0.90[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs594164	0.82[ASN][1000 genomes]
rs616729	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs651001	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs681483	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6901328	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs6907796	0.81[ASN][1000 genomes]
rs6908807	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6916089	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6930371	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6932324	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6936326	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs6941011	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs7749662	0.88[ASN][1000 genomes]
rs7770004	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9348895	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs9348896	0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.81[ASN][1000 genomes]
rs9357154	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9366806	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9394102	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs9394117	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs9394119	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs9394146	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11567000-11579800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:11567600-11581400	Weak transcription	Fetal Brain Female	brain
3	chr6:11567600-11582600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:11567600-11586200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:11567600-11586400	Weak transcription	Fetal Stomach	stomach
6	chr6:11567600-11586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:11567800-11580000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:11567800-11584200	Weak transcription	HSMMtube	muscle
9	chr6:11567800-11586400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:11568000-11586200	Weak transcription	Liver	Liver
11	chr6:11568000-11586600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:11568600-11586800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:11571800-11586600	Weak transcription	Ovary	ovary
14	chr6:11575800-11579200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:11575800-11581000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:11575800-11584400	Weak transcription	HSMM	muscle
17	chr6:11575800-11586200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:11576000-11580200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:11576000-11582600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:11576000-11584600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:11576000-11586200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:11576000-11586400	Weak transcription	HepG2	liver
23	chr6:11576400-11580000	Weak transcription	GM12878-XiMat	blood
24	chr6:11576400-11581600	Weak transcription	Dnd41	blood
25	chr6:11578600-11583200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:11578800-11580200	Genic enhancers	Primary monocytes fromperipheralblood	blood
27	chr6:11578800-11580200	Genic enhancers	Monocytes-CD14+_RO01746	blood

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