Variant report

Variant	rs651001
Chromosome Location	chr6:11569402-11569403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11567697..11570956-chr6:11575966..11579057,3	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10807114	0.84[ASN][1000 genomes]
rs10807115	0.84[ASN][1000 genomes]
rs10947398	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11751884	0.83[ASN][1000 genomes]
rs11752836	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11755780	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11756371	0.83[ASN][1000 genomes]
rs12192094	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs12194771	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12198765	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs12198774	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs12198950	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs12200391	0.84[ASN][1000 genomes]
rs12200454	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs12528839	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs145176	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2025184	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2025185	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs211510	0.90[ASN][1000 genomes]
rs2327440	0.91[CEU][hapmap]
rs2758307	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2807964	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs295051	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs295059	0.90[ASN][1000 genomes]
rs295060	0.90[ASN][1000 genomes]
rs295061	0.90[ASN][1000 genomes]
rs295062	0.88[ASN][1000 genomes]
rs295063	0.88[ASN][1000 genomes]
rs295064	0.88[ASN][1000 genomes]
rs3857556	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711306	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4713593	0.81[ASN][1000 genomes]
rs4713594	0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4713618	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs493183	0.87[ASN][1000 genomes]
rs505685	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs538808	0.81[AMR][1000 genomes]
rs586117	0.86[ASN][1000 genomes]
rs588062	0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs594164	0.85[ASN][1000 genomes]
rs595877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs616729	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs681483	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6901328	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6907796	0.84[ASN][1000 genomes]
rs6908807	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6913697	0.81[ASN][1000 genomes]
rs6914420	0.81[ASN][1000 genomes]
rs6915153	0.81[ASN][1000 genomes]
rs6915366	0.81[ASN][1000 genomes]
rs6916089	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6930371	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6932324	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936326	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6941011	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6941700	0.81[ASN][1000 genomes]
rs7749662	0.85[ASN][1000 genomes]
rs7770004	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9348892	0.81[ASN][1000 genomes]
rs9348895	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9348896	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9357154	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9366806	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9394102	0.84[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs9394117	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9394119	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs9394146	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11556800-11571600	Weak transcription	Ovary	ovary
2	chr6:11557000-11575600	Weak transcription	Spleen	Spleen
3	chr6:11557200-11575400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:11557400-11573200	Weak transcription	Psoas Muscle	Psoas
5	chr6:11563400-11575600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:11564200-11573400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:11564600-11572800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:11565200-11569600	Weak transcription	Fetal Thymus	thymus
9	chr6:11565200-11575400	Weak transcription	Right Ventricle	heart
10	chr6:11565800-11569800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:11565800-11575400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:11567000-11579800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:11567200-11573000	Weak transcription	Brain Germinal Matrix	brain
14	chr6:11567400-11575400	Weak transcription	A549	lung
15	chr6:11567600-11569800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:11567600-11570200	Weak transcription	Aorta	Aorta
17	chr6:11567600-11571000	Weak transcription	Pancreas	Pancrea
18	chr6:11567600-11571400	Weak transcription	Gastric	stomach
19	chr6:11567600-11575400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:11567600-11575600	Weak transcription	Brain Substantia Nigra	brain
21	chr6:11567600-11575600	Weak transcription	Left Ventricle	heart
22	chr6:11567600-11575600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:11567600-11575800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:11567600-11577400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:11567600-11581400	Weak transcription	Fetal Brain Female	brain
26	chr6:11567600-11582600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:11567600-11586200	Weak transcription	Fetal Intestine Small	intestine
28	chr6:11567600-11586400	Weak transcription	Fetal Stomach	stomach
29	chr6:11567600-11586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:11567800-11573200	Weak transcription	Lung	lung
31	chr6:11567800-11575400	Weak transcription	Adipose Nuclei	Adipose
32	chr6:11567800-11575600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:11567800-11575600	Weak transcription	Brain Anterior Caudate	brain
34	chr6:11567800-11575600	Weak transcription	Brain Hippocampus Middle	brain
35	chr6:11567800-11575600	Weak transcription	HepG2	liver
36	chr6:11567800-11580000	Weak transcription	Primary B cells from cord blood	blood
37	chr6:11567800-11584200	Weak transcription	HSMMtube	muscle
38	chr6:11567800-11586400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:11568000-11571600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:11568000-11577400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:11568000-11586200	Weak transcription	Liver	Liver
42	chr6:11568000-11586600	Weak transcription	Brain Angular Gyrus	brain
43	chr6:11568200-11571000	Weak transcription	Placenta	Placenta
44	chr6:11568200-11571400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:11568200-11575400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:11568200-11575800	Weak transcription	Primary T cells from cord blood	blood
47	chr6:11568200-11578200	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:11568200-11578600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:11568400-11571200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:11568600-11569800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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