Variant report

Variant	rs10947398
Chromosome Location	chr6:11532260-11532261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11525059..11527954-chr6:11530732..11532630,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10807114	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10807115	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11751884	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11752836	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11755780	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11756371	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12192094	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12194771	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198765	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12198774	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12198950	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12200391	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12200454	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12528839	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs145176	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025184	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2025185	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs211510	0.88[ASN][1000 genomes]
rs2758307	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2807964	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs295051	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs295059	0.88[ASN][1000 genomes]
rs295060	0.88[ASN][1000 genomes]
rs295061	0.88[ASN][1000 genomes]
rs295062	0.87[ASN][1000 genomes]
rs295063	0.87[ASN][1000 genomes]
rs295064	0.87[ASN][1000 genomes]
rs3857556	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711306	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713593	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4713594	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713618	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs493183	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs505685	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs586117	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs588062	0.88[ASN][1000 genomes]
rs594164	0.87[ASN][1000 genomes]
rs595877	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61570488	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs616729	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs651001	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901328	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6907796	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6908807	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913697	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6914208	0.83[EUR][1000 genomes]
rs6914420	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6915153	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6915366	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6916089	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6930371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6932324	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936326	0.81[EUR][1000 genomes]
rs6940859	0.85[EUR][1000 genomes]
rs6941011	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6941700	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7749662	0.83[ASN][1000 genomes]
rs7770004	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9348892	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9348895	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9348896	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9357154	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9366805	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366806	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9380310	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9380311	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380315	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394102	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394117	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9394119	0.82[EUR][1000 genomes]
rs9394146	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394154	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11522000-11536400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:11527000-11532600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:11527000-11537000	Weak transcription	Placenta	Placenta
4	chr6:11527400-11537200	Weak transcription	Gastric	stomach
5	chr6:11528000-11536800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:11530800-11533000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:11531200-11536800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:11531400-11536200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:11531400-11536200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:11531600-11532400	Enhancers	Rectal Smooth Muscle	rectum
11	chr6:11531600-11533000	Enhancers	Stomach Smooth Muscle	stomach
12	chr6:11531800-11532400	Enhancers	Colon Smooth Muscle	Colon
13	chr6:11531800-11536000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:11531800-11537400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:11532000-11535600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:11532000-11535600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:11532000-11535800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr6:11532000-11536000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:11532200-11532400	Enhancers	Fetal Heart	heart

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