Variant report

Variant	rs61570488
Chromosome Location	chr6:11479011-11479012
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10807115	0.81[AMR][1000 genomes]
rs10947398	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11751884	0.81[AMR][1000 genomes]
rs11752836	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11756371	0.81[AMR][1000 genomes]
rs12192094	0.81[AMR][1000 genomes]
rs12194771	0.81[ASN][1000 genomes]
rs12198765	0.81[AMR][1000 genomes]
rs12198774	0.81[AMR][1000 genomes]
rs12198950	0.81[AMR][1000 genomes]
rs12200391	0.81[AMR][1000 genomes]
rs12200454	0.81[AMR][1000 genomes]
rs12528839	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs145176	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2025184	0.81[AMR][1000 genomes]
rs2025185	0.81[AMR][1000 genomes]
rs2758307	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2807964	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3857556	0.80[ASN][1000 genomes]
rs4713593	0.81[AMR][1000 genomes]
rs4713618	0.80[ASN][1000 genomes]
rs505685	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs616729	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67846147	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6899820	0.88[ASN][1000 genomes]
rs6901328	0.81[AMR][1000 genomes]
rs6904400	0.97[ASN][1000 genomes]
rs6907796	0.81[AMR][1000 genomes]
rs6908807	0.81[ASN][1000 genomes]
rs6916089	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6930371	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6932324	0.81[ASN][1000 genomes]
rs6940859	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6941011	0.82[AMR][1000 genomes]
rs7770004	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357150	0.99[ASN][1000 genomes]
rs9357154	0.82[AMR][1000 genomes]
rs9366805	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9366806	0.82[AMR][1000 genomes]
rs9380310	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380311	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380315	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394102	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394117	0.81[AMR][1000 genomes]
rs9394146	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv18391	chr6:11477421-11483532	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11470200-11479200	Weak transcription	Fetal Kidney	kidney
2	chr6:11475000-11480600	Weak transcription	Placenta	Placenta
3	chr6:11478800-11480600	Weak transcription	Ovary	ovary

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