Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11472497..11474749-chr6:11475109..11477785,2	MCF-7	breast:
2	chr6:11465282..11468042-chr6:11475688..11477880,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11752836	0.82[ASN][1000 genomes]
rs11755780	0.91[JPT][hapmap]
rs12192094	0.91[JPT][hapmap]
rs12198765	0.90[JPT][hapmap]
rs12198774	0.91[JPT][hapmap]
rs12198950	0.91[JPT][hapmap]
rs12200454	0.91[JPT][hapmap]
rs12528839	0.82[ASN][1000 genomes]
rs2025184	0.91[JPT][hapmap]
rs2025185	0.91[JPT][hapmap]
rs4711306	0.91[JPT][hapmap]
rs4713594	0.91[JPT][hapmap]
rs4713618	0.95[JPT][hapmap]
rs588062	0.95[CEU][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs594164	0.87[EUR][1000 genomes]
rs595877	0.95[JPT][hapmap]
rs61570488	0.97[ASN][1000 genomes]
rs67846147	0.81[ASN][1000 genomes]
rs681483	1.00[JPT][hapmap]
rs6899820	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6901328	0.91[JPT][hapmap]
rs6916089	0.81[ASN][1000 genomes]
rs6926422	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6940859	0.97[ASN][1000 genomes]
rs6941011	0.91[JPT][hapmap]
rs7770004	0.82[ASN][1000 genomes]
rs9348895	0.91[JPT][hapmap]
rs9348896	0.91[JPT][hapmap]
rs9357150	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9357154	0.91[JPT][hapmap]
rs9366805	0.94[ASN][1000 genomes]
rs9366806	0.90[JPT][hapmap]
rs9380310	0.97[ASN][1000 genomes]
rs9380311	0.97[ASN][1000 genomes]
rs9380315	0.97[ASN][1000 genomes]
rs9394102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9394117	0.91[JPT][hapmap]
rs9394154	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv18391	chr6:11477421-11483532	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6904400	TMEM170B	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11470200-11479200	Weak transcription	Fetal Kidney	kidney
2	chr6:11475000-11480600	Weak transcription	Placenta	Placenta

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