Variant report

Variant	rs57687595
Chromosome Location	chr15:38947762-38947763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57174526	1.00[AMR][1000 genomes]
rs7168364	1.00[AMR][1000 genomes]
rs74007536	1.00[AMR][1000 genomes]
rs74007537	1.00[AMR][1000 genomes]
rs74007550	1.00[AMR][1000 genomes]
rs74007554	1.00[AMR][1000 genomes]
rs74007555	1.00[AMR][1000 genomes]
rs8029254	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38944400-38949200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:38945200-38948000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr15:38945200-38948200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr15:38945200-38948200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:38945200-38949000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:38945600-38948200	Enhancers	Fetal Thymus	thymus
7	chr15:38945800-38948400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr15:38946000-38948400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr15:38946200-38948400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr15:38946200-38948400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:38946200-38949000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr15:38946400-38952400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:38946400-38959000	Weak transcription	Dnd41	blood
14	chr15:38947000-38948800	Enhancers	Primary T cells from cord blood	blood
15	chr15:38947000-38948800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:38947600-38948000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:38947600-38948000	Enhancers	Thymus	Thymus
18	chr15:38947600-38950400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:38947600-38951800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links