Variant report

Variant	rs8029254
Chromosome Location	chr15:38955942-38955943
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57174526	1.00[AMR][1000 genomes]
rs57687595	1.00[AMR][1000 genomes]
rs7168364	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74007536	1.00[AMR][1000 genomes]
rs74007537	1.00[AMR][1000 genomes]
rs74007550	1.00[AMR][1000 genomes]
rs74007554	1.00[AMR][1000 genomes]
rs74007555	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38946400-38959000	Weak transcription	Dnd41	blood
2	chr15:38949400-38960400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr15:38949600-38963800	Enhancers	Primary T cells from cord blood	blood
4	chr15:38953000-38962400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr15:38953200-38956200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:38953200-38956200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:38953600-38957000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:38954400-38959200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:38954800-38959000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:38955000-38956200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:38955000-38956200	Weak transcription	Fetal Thymus	thymus
12	chr15:38955000-38957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:38955000-38957000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr15:38955000-38957200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr15:38955000-38958200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:38955000-38959200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr15:38955000-38959800	Weak transcription	Primary B cells from cord blood	blood
18	chr15:38955200-38957200	Weak transcription	Thymus	Thymus
19	chr15:38955200-38963200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr15:38955200-38963600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:38955400-38958800	Weak transcription	GM12878-XiMat	blood
22	chr15:38955600-38956000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr15:38955600-38956000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr15:38955600-38956000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:38955800-38956200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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