Variant report

Variant	rs57688017
Chromosome Location	chr8:103140897-103140898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr8:103140662-103141137	HL-60	blood:	n/a	chr8:103140989-103141002
2	FOS	chr8:103140731-103140990	MCF10A-Er-Src	breast:	n/a	chr8:103140850-103140861
3	ELF1	chr8:103140678-103141008	K562	blood:	n/a	chr8:103140877-103140890
4	SPI1	chr8:103140718-103140975	GM12878	blood:	n/a	n/a
5	SPI1	chr8:103140530-103141271	HL-60	blood:	n/a	chr8:103140989-103141002
6	STAT3	chr8:103140622-103140916	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr8:103140809-103140919	MCF10A-Er-Src	breast:	n/a	n/a
8	SPI1	chr8:103140593-103141069	GM12878	blood:	n/a	chr8:103140989-103141002
9	MYC	chr8:103140875-103140978	HUVEC	blood vessel:	n/a	n/a
10	EP300	chr8:103140688-103141048	GM12878	blood:	n/a	n/a
11	FOS	chr8:103140692-103141004	MCF10A-Er-Src	breast:	n/a	chr8:103140850-103140861
12	POLR2A	chr8:103140781-103141116	ProgFib	skin:	n/a	n/a
13	SPI1	chr8:103140590-103141080	GM12891	blood:	n/a	chr8:103140989-103141002
14	FOS	chr8:103140662-103141056	HUVEC	blood vessel:	n/a	chr8:103140850-103140861
15	ELF1	chr8:103140637-103141050	SK-N-SH	brain:	n/a	chr8:103140877-103140890
16	SPI1	chr8:103140446-103141319	GM12878	blood:	n/a	chr8:103140989-103141002
17	EBF1	chr8:103140662-103140961	GM12878	blood:	n/a	n/a
18	CTCF	chr8:103140868-103140955	Fibrobl	skin:	n/a	n/a
19	SMC3	chr8:103140792-103140976	GM12878	blood:	n/a	n/a
20	FOS	chr8:103140721-103140990	MCF10A-Er-Src	breast:	n/a	chr8:103140850-103140861
21	SPI1	chr8:103140673-103140987	K562	blood:	n/a	n/a
22	RELA	chr8:103140640-103141352	GM18951	blood:	n/a	n/a
23	IKZF1	chr8:103140583-103141037	GM12878	blood:	n/a	n/a
24	EBF1	chr8:103140637-103141383	GM12878	blood:	n/a	n/a
25	CTCF	chr8:103140840-103140990	AG10803	skin:	n/a	n/a
26	SPI1	chr8:103140598-103141084	GM12891	blood:	n/a	chr8:103140989-103141002
27	SPI1	chr8:103140711-103140981	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103133340..103138063-chr8:103138855..103142733,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KB-1980E6.3.1-7	chr8:103140753-103140990	NONHSAT128078

Variant related genes	Relation type
NCALD	TF binding region
ENSG00000266756	Chromatin interaction
ENSG00000104490	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10089333	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35019650	0.96[ASN][1000 genomes]
rs66989468	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980591	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6989827	0.84[AFR][1000 genomes]
rs73281518	0.96[ASN][1000 genomes]
rs73281522	0.96[ASN][1000 genomes]
rs7822831	0.84[AFR][1000 genomes]
rs7837619	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891239	chr8:103056517-103162638	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv891240	chr8:103070301-103162638	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2754264	chr8:103070824-103170824	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891241	chr8:103079505-103162638	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103140000-103141800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:103140200-103141000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr8:103140200-103141000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:103140200-103141200	Enhancers	Fetal Muscle Leg	muscle
5	chr8:103140200-103141400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:103140200-103141400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:103140200-103141400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:103140200-103141400	Enhancers	Esophagus	oesophagus
9	chr8:103140200-103141400	Enhancers	Fetal Muscle Trunk	muscle
10	chr8:103140200-103141600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr8:103140200-103141800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:103140200-103141800	Enhancers	Osteobl	bone
13	chr8:103140200-103142000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:103140200-103142000	Enhancers	Fetal Kidney	kidney
15	chr8:103140200-103142400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:103140400-103141400	Enhancers	HSMM	muscle
17	chr8:103140400-103141400	Enhancers	NH-A	brain
18	chr8:103140400-103141400	Enhancers	NHLF	lung
19	chr8:103140400-103141600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:103140400-103141800	Enhancers	HMEC	breast
21	chr8:103140400-103142000	Enhancers	GM12878-XiMat	blood
22	chr8:103140600-103141000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr8:103140600-103141000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr8:103140600-103141200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:103140600-103141200	Enhancers	Fetal Lung	lung
26	chr8:103140600-103141200	Enhancers	HUVEC	blood vessel
27	chr8:103140600-103141400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:103140600-103141400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr8:103140600-103141400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:103140600-103141400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:103140600-103141400	Enhancers	Lung	lung
32	chr8:103140600-103141400	Enhancers	Psoas Muscle	Psoas
33	chr8:103140600-103141600	Flanking Active TSS	NHEK	skin
34	chr8:103140800-103141000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:103140800-103141000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
36	chr8:103140800-103141200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr8:103140800-103141200	Flanking Active TSS	NHDF-Ad	bronchial
38	chr8:103140800-103141400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr8:103140800-103141400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:103140800-103141400	Enhancers	Left Ventricle	heart
41	chr8:103140800-103141400	Enhancers	Right Atrium	heart
42	chr8:103140800-103141400	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr8:103140800-103141600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:103140800-103141800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:103140800-103141800	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links