Variant report

Variant	rs57699260
Chromosome Location	chr13:110513820-110513821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57675052	1.00[AFR][1000 genomes]
rs59122465	1.00[AFR][1000 genomes]
rs60017807	1.00[AFR][1000 genomes]
rs73610803	1.00[AFR][1000 genomes]
rs73610804	1.00[AFR][1000 genomes]
rs73610811	1.00[AFR][1000 genomes]
rs73610812	1.00[AFR][1000 genomes]
rs73610881	1.00[AFR][1000 genomes]
rs73610883	1.00[AFR][1000 genomes]
rs73610884	1.00[AFR][1000 genomes]
rs73610886	1.00[AFR][1000 genomes]
rs73610888	1.00[AFR][1000 genomes]
rs73610890	1.00[AFR][1000 genomes]
rs73610893	1.00[AFR][1000 genomes]
rs73612814	1.00[AFR][1000 genomes]
rs73612825	1.00[AFR][1000 genomes]
rs73612846	1.00[AFR][1000 genomes]
rs73612850	1.00[AFR][1000 genomes]
rs73612852	1.00[AFR][1000 genomes]
rs73612861	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110510600-110514600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:110510800-110514000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:110510800-110514200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:110510800-110514200	Weak transcription	HMEC	breast
5	chr13:110511200-110514200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:110511800-110514600	Enhancers	Dnd41	blood
7	chr13:110512000-110514400	Weak transcription	Placenta	Placenta
8	chr13:110512800-110514600	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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