Variant report

Variant	rs73612850
Chromosome Location	chr13:110520798-110520799
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57675052	1.00[AFR][1000 genomes]
rs57699260	1.00[AFR][1000 genomes]
rs59122465	1.00[AFR][1000 genomes]
rs60017807	1.00[AFR][1000 genomes]
rs73610803	1.00[AFR][1000 genomes]
rs73610804	1.00[AFR][1000 genomes]
rs73610811	1.00[AFR][1000 genomes]
rs73610812	1.00[AFR][1000 genomes]
rs73610881	1.00[AFR][1000 genomes]
rs73610883	1.00[AFR][1000 genomes]
rs73610884	1.00[AFR][1000 genomes]
rs73610886	1.00[AFR][1000 genomes]
rs73610888	1.00[AFR][1000 genomes]
rs73610890	1.00[AFR][1000 genomes]
rs73610893	1.00[AFR][1000 genomes]
rs73612814	1.00[AFR][1000 genomes]
rs73612825	1.00[AFR][1000 genomes]
rs73612846	1.00[AFR][1000 genomes]
rs73612852	1.00[AFR][1000 genomes]
rs73612861	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv32627	chr13:110515211-110524579	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110515600-110521000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:110515600-110521200	Weak transcription	HSMM	muscle
3	chr13:110515800-110520800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:110515800-110521000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:110515800-110521200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:110516000-110521600	Weak transcription	NHEK	skin
7	chr13:110516000-110523400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:110516200-110520800	Weak transcription	Placenta	Placenta
9	chr13:110519000-110521800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr13:110520000-110521200	Enhancers	Pancreas	Pancrea
11	chr13:110520000-110521600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr13:110520200-110521400	Enhancers	A549	lung
13	chr13:110520200-110521600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:110520200-110521600	Enhancers	Rectal Smooth Muscle	rectum
15	chr13:110520200-110521800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr13:110520200-110521800	Enhancers	Small Intestine	intestine
17	chr13:110520200-110522200	Enhancers	Hela-S3	cervix
18	chr13:110520400-110521400	Enhancers	Duodenum Mucosa	Duodenum
19	chr13:110520600-110521800	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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