Variant report

Variant	rs577138423
Chromosome Location	chr15:44583303-44583304
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	esv2754388	chr15:44479709-44592847	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1044686	chr15:44489534-44697482	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv1043822	chr15:44491220-44686957	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv1035386	chr15:44498905-44677174	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44579400-44583600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:44579400-44584000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:44579600-44583400	Active TSS	K562	blood
4	chr15:44579600-44585000	Active TSS	GM12878-XiMat	blood
5	chr15:44579800-44583600	Active TSS	NHLF	lung
6	chr15:44581800-44583600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr15:44582000-44583600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:44582000-44583600	Enhancers	Primary B cells from peripheral blood	blood
9	chr15:44582000-44583800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:44582000-44584000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr15:44582000-44584000	Enhancers	Liver	Liver
12	chr15:44582000-44584000	Enhancers	Colon Smooth Muscle	Colon
13	chr15:44582000-44584800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr15:44582000-44588800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:44582000-44589000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:44582000-44591200	Weak transcription	Spleen	Spleen
17	chr15:44582000-44592000	Weak transcription	Esophagus	oesophagus
18	chr15:44582000-44602000	Weak transcription	Gastric	stomach
19	chr15:44582000-44639400	Weak transcription	Lung	lung
20	chr15:44582200-44583600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:44582200-44583600	Enhancers	Primary hematopoietic stem cells	blood
22	chr15:44582200-44584000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr15:44582200-44584000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr15:44582200-44584000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr15:44582200-44584000	Enhancers	Brain Substantia Nigra	brain
26	chr15:44582200-44584000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr15:44582400-44583400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:44582400-44583600	Enhancers	Ovary	ovary
29	chr15:44582600-44587800	Weak transcription	Stomach Mucosa	stomach
30	chr15:44582800-44583400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:44582800-44583400	Active TSS	Fetal Brain Female	brain
32	chr15:44582800-44583400	Weak transcription	Right Ventricle	heart
33	chr15:44582800-44583400	Enhancers	Thymus	Thymus
34	chr15:44582800-44583600	Enhancers	Small Intestine	intestine
35	chr15:44582800-44583800	Enhancers	Primary B cells from cord blood	blood
36	chr15:44582800-44583800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr15:44582800-44583800	Weak transcription	Fetal Heart	heart
38	chr15:44582800-44584000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:44582800-44584000	Enhancers	Brain Hippocampus Middle	brain
40	chr15:44582800-44584200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr15:44582800-44584200	Enhancers	Fetal Brain Male	brain
42	chr15:44582800-44584400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:44582800-44584600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:44582800-44584600	Weak transcription	Fetal Intestine Small	intestine
45	chr15:44582800-44584800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr15:44582800-44588400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr15:44582800-44588800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:44582800-44588800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:44582800-44589200	Weak transcription	Colonic Mucosa	Colon
50	chr15:44582800-44672200	Weak transcription	HSMM	muscle

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