Variant report

Variant	rs57716335
Chromosome Location	chr12:121068700-121068701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12300860	0.85[ASN][1000 genomes]
rs12370780	0.80[EUR][1000 genomes]
rs4766972	0.85[ASN][1000 genomes]
rs4766974	0.80[EUR][1000 genomes]
rs4766976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767922	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767923	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6490299	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66473965	0.95[ASN][1000 genomes]
rs7974387	0.80[EUR][1000 genomes]
rs7976660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121064000-121069000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:121066000-121069400	Enhancers	Fetal Brain Male	brain
3	chr12:121067600-121069200	Enhancers	Brain Angular Gyrus	brain
4	chr12:121067600-121069200	Enhancers	Brain Germinal Matrix	brain
5	chr12:121067800-121068800	Enhancers	Brain Cingulate Gyrus	brain
6	chr12:121067800-121069000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
7	chr12:121067800-121069400	Enhancers	Fetal Brain Female	brain
8	chr12:121068000-121068800	Enhancers	Brain Anterior Caudate	brain
9	chr12:121068000-121068800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr12:121068000-121068800	Enhancers	Brain Substantia Nigra	brain
11	chr12:121068000-121069000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:121068200-121069000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr12:121068400-121069000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:121068600-121068800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:121068600-121068800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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