Variant report

Variant	rs4766974
Chromosome Location	chr12:121069115-121069116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10849772	0.86[ASN][1000 genomes]
rs11065178	0.86[ASN][1000 genomes]
rs11065180	0.85[ASN][1000 genomes]
rs12310124	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12317166	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12370780	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4300462	0.81[ASN][1000 genomes]
rs4318046	0.85[ASN][1000 genomes]
rs4382980	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4766973	0.88[ASN][1000 genomes]
rs4766976	0.80[EUR][1000 genomes]
rs4767922	0.80[EUR][1000 genomes]
rs57716335	0.80[EUR][1000 genomes]
rs7974387	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7976299	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7976660	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121066000-121069400	Enhancers	Fetal Brain Male	brain
2	chr12:121067600-121069200	Enhancers	Brain Angular Gyrus	brain
3	chr12:121067600-121069200	Enhancers	Brain Germinal Matrix	brain
4	chr12:121067800-121069400	Enhancers	Fetal Brain Female	brain
5	chr12:121069000-121069200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:121069000-121069200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links