Variant report

Variant	rs11065178
Chromosome Location	chr12:121067429-121067430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10849772	1.00[ASN][1000 genomes]
rs10849774	1.00[TSI][hapmap]
rs10849781	1.00[ASW][hapmap];1.00[TSI][hapmap]
rs11065176	0.90[ASN][1000 genomes]
rs11065180	0.99[ASN][1000 genomes]
rs11065189	1.00[TSI][hapmap]
rs11065194	1.00[TSI][hapmap]
rs11065235	1.00[ASW][hapmap]
rs12310124	0.85[ASN][1000 genomes]
rs12317166	0.84[ASN][1000 genomes]
rs12370780	0.85[ASN][1000 genomes]
rs2229534	1.00[ASW][hapmap];1.00[TSI][hapmap]
rs3809310	1.00[ASW][hapmap];1.00[TSI][hapmap]
rs4300462	0.94[ASN][1000 genomes]
rs4318046	0.99[ASN][1000 genomes]
rs4766974	0.86[ASN][1000 genomes]
rs7973568	1.00[TSI][hapmap]
rs7974387	0.85[ASN][1000 genomes]
rs7976299	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121064000-121069000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:121066000-121069400	Enhancers	Fetal Brain Male	brain
3	chr12:121066800-121067800	Weak transcription	Fetal Brain Female	brain
4	chr12:121066800-121068400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:121067200-121067600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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