Variant report

Variant	rs57717665
Chromosome Location	chr5:35072620-35072621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1010119	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057828	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057829	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58129107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60130755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61563078	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091133	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091139	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091143	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091157	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7713977	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7714144	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7714636	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7734225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881528	chr5:35023034-35085180	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv881411	chr5:35031338-35085180	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv880606	chr5:35035579-35085180	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35061600-35096000	Weak transcription	Gastric	stomach
2	chr5:35062600-35091600	Weak transcription	Colonic Mucosa	Colon
3	chr5:35063600-35074400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:35063800-35089600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:35064200-35091600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:35066000-35074000	Strong transcription	Placenta	Placenta
7	chr5:35066200-35087600	Weak transcription	Ovary	ovary
8	chr5:35066400-35094600	Weak transcription	HepG2	liver
9	chr5:35067400-35075400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:35069000-35083200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:35070000-35083200	Weak transcription	Pancreas	Pancrea
12	chr5:35070400-35073200	Weak transcription	Liver	Liver
13	chr5:35070400-35073800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:35072200-35074200	Strong transcription	Fetal Intestine Large	intestine
15	chr5:35072400-35073000	Enhancers	Fetal Muscle Leg	muscle
16	chr5:35072400-35074000	Strong transcription	Duodenum Mucosa	Duodenum
17	chr5:35072600-35073600	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links