Variant report

Variant	rs1057828
Chromosome Location	chr5:35064515-35064516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1010119	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057829	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57717665	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58129107	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60130755	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61563078	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860456	1.00[CHB][hapmap]
rs6861155	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883056	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091143	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091157	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7713977	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7714144	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7714636	1.00[ASN][1000 genomes]
rs7734225	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs930068	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881528	chr5:35023034-35085180	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv881411	chr5:35031338-35085180	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv880606	chr5:35035579-35085180	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35052000-35065200	Weak transcription	Fetal Intestine Small	intestine
2	chr5:35053200-35064600	Weak transcription	Placenta	Placenta
3	chr5:35057400-35065200	Weak transcription	Pancreas	Pancrea
4	chr5:35060000-35065600	Enhancers	Liver	Liver
5	chr5:35060600-35065000	Weak transcription	HepG2	liver
6	chr5:35060600-35065800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:35061400-35065000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:35061600-35096000	Weak transcription	Gastric	stomach
9	chr5:35062000-35065000	Weak transcription	Fetal Intestine Large	intestine
10	chr5:35062600-35065800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr5:35062600-35091600	Weak transcription	Colonic Mucosa	Colon
12	chr5:35063200-35065800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:35063400-35065200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:35063600-35074400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:35063800-35089600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:35064000-35065000	Weak transcription	Ovary	ovary
17	chr5:35064000-35065200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr5:35064200-35064600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:35064200-35091600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:35064400-35066800	Weak transcription	Fetal Stomach	stomach

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