Variant report

Variant	rs930068
Chromosome Location	chr5:35127378-35127379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10059483	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10067752	0.87[EUR][1000 genomes]
rs10078077	1.00[CEU][hapmap]
rs1010119	1.00[MEX][hapmap]
rs1039431	1.00[CEU][hapmap]
rs10434586	1.00[CEU][hapmap]
rs1057828	1.00[MEX][hapmap]
rs1115964	1.00[ASN][1000 genomes]
rs13164310	0.92[EUR][1000 genomes]
rs13181490	1.00[CEU][hapmap]
rs13182185	1.00[CEU][hapmap]
rs1587605	1.00[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs1609785	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2018170	1.00[CEU][hapmap]
rs2047741	1.00[CEU][hapmap]
rs2914107	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2914108	1.00[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs2914109	1.00[CEU][hapmap]
rs2914110	1.00[CEU][hapmap]
rs2914112	1.00[CEU][hapmap]
rs2962084	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2962086	1.00[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs2962088	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2962089	1.00[CEU][hapmap]
rs2962090	1.00[CEU][hapmap]
rs2962093	1.00[CEU][hapmap]
rs2962095	1.00[CEU][hapmap]
rs2962096	1.00[CEU][hapmap]
rs2962097	1.00[CEU][hapmap]
rs2962098	1.00[CEU][hapmap]
rs2962099	1.00[CEU][hapmap]
rs2962104	1.00[CEU][hapmap]
rs2962106	1.00[CEU][hapmap]
rs2962112	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2962113	1.00[CEU][hapmap]
rs34349127	1.00[ASN][1000 genomes]
rs34531945	1.00[ASN][1000 genomes]
rs35322400	0.89[EUR][1000 genomes]
rs4288098	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4333296	1.00[CEU][hapmap]
rs4343815	1.00[CEU][hapmap]
rs4370254	1.00[CEU][hapmap]
rs4403155	1.00[CEU][hapmap]
rs4419570	0.92[EUR][1000 genomes]
rs4585417	1.00[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs4703501	0.89[EUR][1000 genomes]
rs55687280	1.00[ASN][1000 genomes]
rs59549906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60000687	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451181	1.00[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs66519917	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66782186	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66891287	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66893440	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66967212	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72732874	1.00[ASN][1000 genomes]
rs72734538	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075084	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075086	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075098	0.92[EUR][1000 genomes]
rs9292571	1.00[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs9292572	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs930067	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954286	1.00[CEU][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35112800-35129800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:35115800-35129800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:35116800-35127800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:35118000-35127600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr5:35118200-35129800	Weak transcription	Placenta	Placenta
6	chr5:35120200-35127800	Weak transcription	NHDF-Ad	bronchial
7	chr5:35120200-35127800	Weak transcription	NHLF	lung
8	chr5:35120400-35129000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:35121600-35129800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:35122200-35127400	Enhancers	Liver	Liver
11	chr5:35125400-35129000	Weak transcription	Stomach Mucosa	stomach
12	chr5:35126200-35129800	Weak transcription	Ovary	ovary
13	chr5:35126400-35129800	Weak transcription	Fetal Intestine Small	intestine
14	chr5:35126800-35129000	Weak transcription	HepG2	liver
15	chr5:35126800-35129800	Weak transcription	Fetal Intestine Large	intestine
16	chr5:35127200-35127400	Enhancers	Pancreas	Pancrea
17	chr5:35127200-35128200	Enhancers	Fetal Heart	heart
18	chr5:35127200-35132200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links