Variant report

Variant	rs66891287
Chromosome Location	chr5:35119253-35119254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:35118263..35120993-chr5:35135116..35136770,2	MCF-7	breast:
2	chr5:35119161..35121862-chr5:35122776..35125240,2	MCF-7	breast:
3	chr5:35113747..35115676-chr5:35118323..35120483,2	K562	blood:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10059483	0.92[EUR][1000 genomes]
rs10067752	0.87[EUR][1000 genomes]
rs1115964	1.00[ASN][1000 genomes]
rs13164310	0.92[EUR][1000 genomes]
rs1587605	0.92[EUR][1000 genomes]
rs1609785	0.92[EUR][1000 genomes]
rs2914107	0.92[EUR][1000 genomes]
rs2914108	0.92[EUR][1000 genomes]
rs2962084	0.92[EUR][1000 genomes]
rs2962086	0.92[EUR][1000 genomes]
rs2962088	0.92[EUR][1000 genomes]
rs2962112	0.92[EUR][1000 genomes]
rs34349127	1.00[ASN][1000 genomes]
rs34531945	1.00[ASN][1000 genomes]
rs35322400	0.89[EUR][1000 genomes]
rs4288098	0.92[EUR][1000 genomes]
rs4419570	0.92[EUR][1000 genomes]
rs4585417	0.92[EUR][1000 genomes]
rs4703501	0.89[EUR][1000 genomes]
rs55687280	1.00[ASN][1000 genomes]
rs59549906	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60000687	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451181	0.92[EUR][1000 genomes]
rs66519917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66782186	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66893440	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66967212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72732874	1.00[ASN][1000 genomes]
rs72734538	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075084	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075098	0.92[EUR][1000 genomes]
rs9292571	0.92[EUR][1000 genomes]
rs9292572	0.92[EUR][1000 genomes]
rs930067	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930068	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35112800-35129800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:35113800-35124000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:35114200-35120800	Weak transcription	Fetal Kidney	kidney
4	chr5:35115800-35119800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:35115800-35129800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:35116200-35121000	Weak transcription	Stomach Mucosa	stomach
7	chr5:35116800-35123000	Weak transcription	Gastric	stomach
8	chr5:35116800-35127800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:35117000-35122400	Weak transcription	HepG2	liver
10	chr5:35117200-35120400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:35117200-35121400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:35117400-35119400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:35117400-35119800	Enhancers	Osteobl	bone
14	chr5:35117400-35120200	Enhancers	NHDF-Ad	bronchial
15	chr5:35117600-35119600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:35117600-35119800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:35117800-35119600	Enhancers	NH-A	brain
18	chr5:35118000-35119600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:35118000-35127600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:35118200-35120800	Weak transcription	Liver	Liver
21	chr5:35118200-35122800	Weak transcription	Fetal Intestine Large	intestine
22	chr5:35118200-35129800	Weak transcription	Placenta	Placenta
23	chr5:35118400-35119400	Weak transcription	NHLF	lung
24	chr5:35118400-35124000	Weak transcription	Fetal Intestine Small	intestine
25	chr5:35118600-35120000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:35118800-35120200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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