Variant report

Variant	rs66519917
Chromosome Location	chr5:35115711-35115712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10059483	0.92[EUR][1000 genomes]
rs10067752	0.87[EUR][1000 genomes]
rs1115964	1.00[ASN][1000 genomes]
rs13164310	0.92[EUR][1000 genomes]
rs1587605	0.92[EUR][1000 genomes]
rs1609785	0.92[EUR][1000 genomes]
rs2914107	0.92[EUR][1000 genomes]
rs2914108	0.92[EUR][1000 genomes]
rs2962084	0.92[EUR][1000 genomes]
rs2962086	0.92[EUR][1000 genomes]
rs2962088	0.92[EUR][1000 genomes]
rs2962112	0.92[EUR][1000 genomes]
rs34349127	1.00[ASN][1000 genomes]
rs34531945	1.00[ASN][1000 genomes]
rs35322400	0.89[EUR][1000 genomes]
rs4288098	0.92[EUR][1000 genomes]
rs4419570	0.92[EUR][1000 genomes]
rs4585417	0.92[EUR][1000 genomes]
rs4703501	0.89[EUR][1000 genomes]
rs55687280	1.00[ASN][1000 genomes]
rs59549906	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60000687	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451181	0.92[EUR][1000 genomes]
rs66782186	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66891287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66893440	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66967212	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72732874	1.00[ASN][1000 genomes]
rs72734538	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075098	0.92[EUR][1000 genomes]
rs9292571	0.92[EUR][1000 genomes]
rs9292572	0.92[EUR][1000 genomes]
rs930067	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930068	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35112800-35129800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:35113800-35118000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35113800-35118400	Strong transcription	Fetal Intestine Small	intestine
4	chr5:35113800-35124000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:35114000-35116800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr5:35114000-35118200	Strong transcription	Fetal Intestine Large	intestine
7	chr5:35114000-35118200	Strong transcription	Placenta	Placenta
8	chr5:35114200-35120800	Weak transcription	Fetal Kidney	kidney
9	chr5:35114600-35116200	Enhancers	Stomach Mucosa	stomach
10	chr5:35114800-35115800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr5:35115200-35116800	Weak transcription	Liver	Liver
12	chr5:35115400-35117000	Enhancers	HepG2	liver
13	chr5:35115600-35115800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr5:35115600-35116200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:35115600-35116800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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