Variant report

Variant	rs2962086
Chromosome Location	chr5:35130748-35130749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IKZF1	chr5:35130253-35130831	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35128476..35132194-chr5:35133007..35138405,8	MCF-7	breast:
2	chr5:35129006..35131934-chr5:35135179..35137405,2	MCF-7	breast:

Variant related genes	Relation type
PRLR	TF binding region
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10059483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10067752	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10078077	1.00[CEU][hapmap]
rs1039431	1.00[CEU][hapmap]
rs10434586	1.00[CEU][hapmap]
rs13164310	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181490	1.00[CEU][hapmap]
rs13182185	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs1587605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1609785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2018170	1.00[CEU][hapmap]
rs2047741	1.00[CEU][hapmap]
rs2914107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914108	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2914110	1.00[CEU][hapmap]
rs2914112	1.00[CEU][hapmap]
rs2962084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962087	0.86[AFR][1000 genomes]
rs2962088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962089	1.00[CEU][hapmap]
rs2962090	1.00[CEU][hapmap]
rs2962091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2962093	1.00[CEU][hapmap]
rs2962095	1.00[CEU][hapmap]
rs2962096	1.00[CEU][hapmap]
rs2962097	1.00[CEU][hapmap]
rs2962098	1.00[CEU][hapmap]
rs2962099	1.00[CEU][hapmap]
rs2962104	1.00[CEU][hapmap]
rs2962106	1.00[CEU][hapmap]
rs2962112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs35194391	0.97[ASN][1000 genomes]
rs35245967	0.99[ASN][1000 genomes]
rs35322400	0.97[EUR][1000 genomes]
rs36034794	0.99[ASN][1000 genomes]
rs4288098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4333296	1.00[CEU][hapmap]
rs4343815	1.00[CEU][hapmap]
rs4370254	1.00[CEU][hapmap]
rs4403155	1.00[CEU][hapmap]
rs4419570	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585417	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4703501	0.97[EUR][1000 genomes]
rs59549906	0.92[EUR][1000 genomes]
rs60000687	0.86[EUR][1000 genomes]
rs6451181	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66519917	0.92[EUR][1000 genomes]
rs66782186	0.92[EUR][1000 genomes]
rs66891287	0.92[EUR][1000 genomes]
rs66893440	0.86[EUR][1000 genomes]
rs66967212	0.92[EUR][1000 genomes]
rs72734538	0.86[EUR][1000 genomes]
rs73075084	0.92[EUR][1000 genomes]
rs73075086	0.92[EUR][1000 genomes]
rs73075098	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292571	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9292572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs930067	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs930068	1.00[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs954286	1.00[CEU][hapmap]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35127200-35132200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:35128200-35136400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:35128800-35130800	Enhancers	HSMM	muscle
4	chr5:35128800-35132600	Enhancers	Osteobl	bone
5	chr5:35129000-35130800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:35129000-35131000	Enhancers	Stomach Mucosa	stomach
7	chr5:35129000-35131200	Enhancers	Liver	Liver
8	chr5:35129200-35132000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:35129400-35131200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:35129400-35131800	Enhancers	NHLF	lung
11	chr5:35129400-35132400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:35129800-35130800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:35129800-35130800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr5:35129800-35131000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr5:35129800-35131000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr5:35129800-35131000	Strong transcription	Fetal Intestine Small	intestine
17	chr5:35129800-35131200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr5:35129800-35131200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:35129800-35131200	Enhancers	Pancreas	Pancrea
20	chr5:35129800-35131200	Bivalent Enhancer	Dnd41	blood
21	chr5:35129800-35132200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:35130000-35130800	Weak transcription	Esophagus	oesophagus
23	chr5:35130000-35131000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:35130000-35131200	Bivalent Enhancer	Fetal Thymus	thymus
25	chr5:35130200-35130800	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr5:35130200-35131000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr5:35130200-35131200	Strong transcription	Fetal Intestine Large	intestine
28	chr5:35130200-35132600	Enhancers	NHDF-Ad	bronchial
29	chr5:35130200-35132800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:35130200-35133200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr5:35130200-35135400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:35130400-35131600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:35130400-35131600	Weak transcription	NH-A	brain
34	chr5:35130400-35131800	Weak transcription	HepG2	liver
35	chr5:35130600-35130800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr5:35130600-35131000	Bivalent Enhancer	Primary T cells from cord blood	blood
37	chr5:35130600-35131600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:35130600-35131800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr5:35130600-35135400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr5:35130600-35135400	Weak transcription	Placenta	Placenta
41	chr5:35130600-35135400	Weak transcription	Ovary	ovary
42	chr5:35130600-35136200	Weak transcription	NHEK	skin

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