Variant report

Variant	rs1846996
Chromosome Location	chr5:35148400-35148401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35146899..35149720-chr5:35150501..35153233,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10059483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10067752	0.96[ASN][1000 genomes]
rs1039431	0.80[CHB][hapmap]
rs10447139	0.80[CHB][hapmap]
rs13164310	0.93[ASN][1000 genomes]
rs13181490	0.80[CHB][hapmap]
rs13182185	0.86[CHB][hapmap]
rs1587605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1609785	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2018170	0.80[CHB][hapmap]
rs249529	0.80[CHB][hapmap]
rs249531	0.80[CHB][hapmap]
rs2914107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2914108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2914109	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2914112	0.80[CHB][hapmap]
rs2962084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2962086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2962088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2962090	0.80[CHB][hapmap]
rs2962091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2962093	0.80[CHB][hapmap]
rs2962095	0.80[CHB][hapmap]
rs2962096	0.80[CHB][hapmap]
rs2962098	0.80[CHB][hapmap]
rs2962099	0.80[CHB][hapmap]
rs2962106	0.80[CHB][hapmap]
rs2962112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2962113	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs35194391	0.96[ASN][1000 genomes]
rs35245967	0.97[ASN][1000 genomes]
rs36034794	0.97[ASN][1000 genomes]
rs4288098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4343815	0.80[CHB][hapmap]
rs4403155	0.80[CHB][hapmap]
rs4419570	0.96[ASN][1000 genomes]
rs4585417	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4703500	0.80[CHB][hapmap]
rs4703501	0.80[CHB][hapmap]
rs6451181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs73075098	0.96[ASN][1000 genomes]
rs9292571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9292572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35137000-35156600	Weak transcription	Placenta	Placenta
2	chr5:35137000-35157200	Weak transcription	Fetal Intestine Large	intestine
3	chr5:35137000-35158600	Weak transcription	Fetal Intestine Small	intestine
4	chr5:35145800-35148800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:35147000-35151200	Weak transcription	NHDF-Ad	bronchial
6	chr5:35147000-35151400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:35147000-35151600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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