Variant report

Variant	rs2962093
Chromosome Location	chr5:35134805-35134806
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr5:35134238-35134894	HepG2	liver:	n/a	n/a
2	NFIC	chr5:35134322-35134845	HepG2	liver:	n/a	n/a
3	POLR2A	chr5:35134530-35135048	HepG2	liver:	n/a	n/a
4	MYBL2	chr5:35134173-35135033	HepG2	liver:	n/a	n/a
5	ARID3A	chr5:35134303-35135107	HepG2	liver:	n/a	chr5:35134842-35134858 chr5:35134754-35134770
6	SP1	chr5:35134255-35134877	HepG2	liver:	n/a	chr5:35134498-35134512 chr5:35134504-35134518 chr5:35134508-35134517 chr5:35134507-35134519

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35128476..35132194-chr5:35133007..35138405,8	MCF-7	breast:

Variant related genes	Relation type
PRLR	TF binding region
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10078077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1039430	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1039431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10434586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13156190	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13181490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181536	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13181984	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13182275	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1587605	1.00[CEU][hapmap]
rs1609785	0.80[CHB][hapmap]
rs1846995	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1846996	0.80[CHB][hapmap]
rs1966571	0.81[CHB][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2018170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2062699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2914107	0.80[CHB][hapmap]
rs2914108	1.00[CEU][hapmap]
rs2914109	0.80[CHB][hapmap]
rs2914110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914113	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2914115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962084	0.80[CHB][hapmap]
rs2962085	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962086	1.00[CEU][hapmap]
rs2962087	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962091	0.80[CHB][hapmap]
rs2962092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962100	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2962103	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2962104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962105	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962108	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962110	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962111	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962112	0.80[CHB][hapmap]
rs2962113	0.80[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376897	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4295366	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4333296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4343815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4403155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4455534	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4585417	1.00[CEU][hapmap]
rs4703392	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59336322	0.97[EUR][1000 genomes]
rs6451180	0.97[EUR][1000 genomes]
rs6451181	1.00[CEU][hapmap]
rs67378061	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075098	0.91[AFR][1000 genomes]
rs7721935	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9292571	1.00[CEU][hapmap]
rs9292572	0.80[CHB][hapmap]
rs930068	1.00[CEU][hapmap]
rs954286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35128200-35136400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35130200-35135400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:35130600-35135400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:35130600-35135400	Weak transcription	Placenta	Placenta
5	chr5:35130600-35135400	Weak transcription	Ovary	ovary
6	chr5:35130600-35136200	Weak transcription	NHEK	skin
7	chr5:35130800-35135000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:35131200-35135400	Weak transcription	Pancreas	Pancrea
9	chr5:35131800-35135800	Weak transcription	NHLF	lung
10	chr5:35132200-35135400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:35132200-35135800	Weak transcription	NH-A	brain
12	chr5:35132200-35136000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:35132400-35136000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:35133200-35139200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:35133400-35135400	Enhancers	Fetal Intestine Small	intestine
16	chr5:35133800-35135400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:35133800-35136000	Weak transcription	Osteobl	bone
18	chr5:35133800-35136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:35134000-35135600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:35134200-35135400	Flanking Active TSS	HepG2	liver
21	chr5:35134200-35135800	Enhancers	Fetal Intestine Large	intestine
22	chr5:35134600-35135400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr5:35134600-35139200	Enhancers	NHDF-Ad	bronchial
24	chr5:35134800-35135200	Active TSS	Liver	Liver
25	chr5:35134800-35138000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:35134800-35139200	Enhancers	Placenta Amnion	Placenta Amnion

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