Variant report

Variant	rs2962108
Chromosome Location	chr5:35136520-35136521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr5:35136432-35136828	SK-N-SH	brain:	n/a	chr5:35136658-35136669 chr5:35136661-35136668 chr5:35136658-35136670 chr5:35136660-35136668 chr5:35136660-35136668 chr5:35136659-35136669
2	MYC	chr5:35136341-35136755	MCF10A-Er-Src	breast:	n/a	chr5:35136659-35136668
3	TCF12	chr5:35136308-35136913	SK-N-SH	brain:	n/a	n/a
4	TCF12	chr5:35136408-35137005	SK-N-SH	brain:	n/a	n/a
5	STAT3	chr5:35136448-35136784	MCF10A-Er-Src	breast:	n/a	chr5:35136732-35136743
6	EBF1	chr5:35136421-35136777	GM12878	blood:	n/a	chr5:35136607-35136618 chr5:35136627-35136638
7	E2F4	chr5:35136432-35136741	MCF10A-Er-Src	breast:	n/a	n/a
8	FOSL2	chr5:35136396-35136975	SK-N-SH	brain:	n/a	chr5:35136658-35136669 chr5:35136661-35136668 chr5:35136658-35136670 chr5:35136660-35136668 chr5:35136660-35136668 chr5:35136659-35136669
9	EBF1	chr5:35136511-35136752	GM12878	blood:	n/a	chr5:35136607-35136618 chr5:35136627-35136638
10	FOS	chr5:35136377-35136859	MCF10A-Er-Src	breast:	n/a	chr5:35136658-35136669 chr5:35136661-35136668 chr5:35136658-35136670 chr5:35136660-35136668 chr5:35136660-35136668 chr5:35136659-35136669
11	POLR2A	chr5:35136395-35136859	U87	brain:	n/a	n/a
12	MAFK	chr5:35136419-35136814	IMR90	lung:	n/a	n/a
13	FOS	chr5:35136448-35136855	MCF10A-Er-Src	breast:	n/a	chr5:35136658-35136669 chr5:35136661-35136668 chr5:35136658-35136670 chr5:35136660-35136668 chr5:35136660-35136668 chr5:35136659-35136669
14	POLR2A	chr5:35136307-35136945	U87	brain:	n/a	n/a
15	NFIC	chr5:35136400-35136986	SK-N-SH	brain:	n/a	n/a
16	STAT3	chr5:35136480-35136778	MCF10A-Er-Src	breast:	n/a	chr5:35136732-35136743
17	CEBPB	chr5:35136263-35136860	IMR90	lung:	n/a	chr5:35136291-35136302
18	STAT3	chr5:35136455-35136785	MCF10A-Er-Src	breast:	n/a	chr5:35136732-35136743
19	KAP1	chr5:35136433-35137031	U2OS	brain:	n/a	n/a
20	FOS	chr5:35136375-35136856	MCF10A-Er-Src	breast:	n/a	chr5:35136658-35136669 chr5:35136661-35136668 chr5:35136658-35136670 chr5:35136660-35136668 chr5:35136660-35136668 chr5:35136659-35136669
21	EBF1	chr5:35136436-35136702	GM12878	blood:	n/a	chr5:35136607-35136618 chr5:35136627-35136638
22	POLR2A	chr5:35136313-35136945	U87	brain:	n/a	n/a
23	FOS	chr5:35136389-35136862	MCF10A-Er-Src	breast:	n/a	chr5:35136658-35136669 chr5:35136661-35136668 chr5:35136658-35136670 chr5:35136660-35136668 chr5:35136660-35136668 chr5:35136659-35136669

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35129006..35131934-chr5:35135179..35137405,2	MCF-7	breast:
2	chr5:35128476..35132194-chr5:35133007..35138405,8	MCF-7	breast:

Variant related genes	Relation type
PRLR	TF binding region
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10078077	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1039430	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1039431	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10434586	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13156190	0.93[EUR][1000 genomes]
rs13181490	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13181536	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13181984	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13182185	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13182275	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1846995	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1966571	0.97[EUR][1000 genomes]
rs2018170	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2047741	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2062699	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2914110	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2914112	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2914113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2914115	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962085	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962087	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962089	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962090	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962092	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962093	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962095	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962096	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962097	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962098	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962099	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962100	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962101	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2962103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2962104	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962105	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962106	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962110	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962111	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962113	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34376897	0.97[EUR][1000 genomes]
rs4295366	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4333296	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4343815	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4370254	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4403155	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4455534	0.93[EUR][1000 genomes]
rs4703392	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59336322	0.97[EUR][1000 genomes]
rs6451180	0.97[EUR][1000 genomes]
rs67378061	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7721935	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs954286	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35133200-35139200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:35134600-35139200	Enhancers	NHDF-Ad	bronchial
3	chr5:35134800-35138000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:35134800-35139200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr5:35135400-35136800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:35135400-35137000	Genic enhancers	Fetal Intestine Small	intestine
7	chr5:35135400-35137200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:35135400-35137600	Enhancers	HepG2	liver
9	chr5:35135400-35137800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:35135400-35139400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:35135600-35137000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:35135800-35136800	Enhancers	Fetal Thymus	thymus
13	chr5:35135800-35137000	Genic enhancers	Fetal Intestine Large	intestine
14	chr5:35135800-35137600	Enhancers	NH-A	brain
15	chr5:35135800-35138400	Enhancers	NHLF	lung
16	chr5:35136000-35137000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:35136000-35138200	Enhancers	HSMMtube	muscle
18	chr5:35136000-35138800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:35136000-35139000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:35136000-35139000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr5:35136000-35139000	Enhancers	HSMM	muscle
22	chr5:35136000-35139000	Enhancers	Osteobl	bone
23	chr5:35136200-35136600	Enhancers	Primary T cells from cord blood	blood
24	chr5:35136200-35137000	Genic enhancers	Placenta	Placenta
25	chr5:35136200-35137000	Enhancers	NHEK	skin
26	chr5:35136400-35136600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr5:35136400-35136800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr5:35136400-35136800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:35136400-35136800	Enhancers	Dnd41	blood
30	chr5:35136400-35137000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr5:35136400-35137000	Enhancers	Monocytes-CD14+_RO01746	blood

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