Variant report

Variant	rs2962101
Chromosome Location	chr5:35135741-35135742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr5:35135309-35135784	HepG2	liver:	n/a	n/a
2	FOXA1	chr5:35135331-35135854	HepG2	liver:	n/a	n/a
3	HNF4A	chr5:35135348-35135766	HepG2	liver:	n/a	n/a
4	FOXA1	chr5:35135428-35135816	HepG2	liver:	n/a	n/a
5	MYBL2	chr5:35135297-35135939	HepG2	liver:	n/a	n/a
6	HNF4A	chr5:35135375-35135790	HepG2	liver:	n/a	n/a
7	MYBL2	chr5:35135135-35135884	HepG2	liver:	n/a	n/a
8	MAX	chr5:35135191-35135959	HepG2	liver:	n/a	n/a
9	SP1	chr5:35135272-35135766	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35129006..35131934-chr5:35135179..35137405,2	MCF-7	breast:
2	chr5:35128476..35132194-chr5:35133007..35138405,8	MCF-7	breast:

Variant related genes	Relation type
PRLR	TF binding region
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10078077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1039430	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1039431	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10434586	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13181490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13181536	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13181984	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13182185	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13182275	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1846995	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1966571	0.83[ASW][hapmap];0.81[CHB][hapmap];0.96[MKK][hapmap]
rs2018170	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2047741	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2062699	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2914110	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2914112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2914113	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2914115	1.00[ASN][1000 genomes]
rs2962085	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2962087	1.00[ASN][1000 genomes]
rs2962089	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs2962090	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2962092	1.00[ASN][1000 genomes]
rs2962093	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2962095	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2962096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2962097	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs2962098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2962099	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2962100	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2962103	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2962104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2962105	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2962106	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2962108	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2962110	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2962111	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2962113	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4295366	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4333296	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4343815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4370254	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4403155	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4703392	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs67378061	1.00[ASN][1000 genomes]
rs7721935	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9292572	0.82[YRI][hapmap]
rs954286	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35128200-35136400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35130600-35136200	Weak transcription	NHEK	skin
3	chr5:35131800-35135800	Weak transcription	NHLF	lung
4	chr5:35132200-35135800	Weak transcription	NH-A	brain
5	chr5:35132200-35136000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:35132400-35136000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:35133200-35139200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:35133800-35136000	Weak transcription	Osteobl	bone
9	chr5:35133800-35136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:35134200-35135800	Enhancers	Fetal Intestine Large	intestine
11	chr5:35134600-35139200	Enhancers	NHDF-Ad	bronchial
12	chr5:35134800-35138000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:35134800-35139200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr5:35135200-35135800	Flanking Active TSS	Liver	Liver
15	chr5:35135400-35135800	Genic enhancers	Placenta	Placenta
16	chr5:35135400-35136000	Enhancers	Pancreas	Pancrea
17	chr5:35135400-35136800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:35135400-35137000	Genic enhancers	Fetal Intestine Small	intestine
19	chr5:35135400-35137200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:35135400-35137600	Enhancers	HepG2	liver
21	chr5:35135400-35137800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:35135400-35139400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:35135600-35137000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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