Variant report

Variant	rs2962087
Chromosome Location	chr5:35130929-35130930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35128476..35132194-chr5:35133007..35138405,8	MCF-7	breast:
2	chr5:35129006..35131934-chr5:35135179..35137405,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10078077	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1039430	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1039431	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10434586	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13156190	0.93[EUR][1000 genomes]
rs13181490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181536	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13181984	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182185	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13182275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1846995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966571	0.97[EUR][1000 genomes]
rs2018170	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047741	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2062699	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2914107	0.93[AFR][1000 genomes]
rs2914108	0.93[AFR][1000 genomes]
rs2914110	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914112	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914113	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2914115	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962086	0.86[AFR][1000 genomes]
rs2962088	0.86[AFR][1000 genomes]
rs2962089	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962090	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962092	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962093	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962095	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962096	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962097	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962098	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962099	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962100	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962101	1.00[ASN][1000 genomes]
rs2962103	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2962104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962106	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962108	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962110	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962113	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376897	0.97[EUR][1000 genomes]
rs4295366	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4333296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4343815	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370254	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4403155	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4455534	0.93[EUR][1000 genomes]
rs4703392	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59336322	0.97[EUR][1000 genomes]
rs6451180	0.97[EUR][1000 genomes]
rs67378061	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721935	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954286	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35127200-35132200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:35128200-35136400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:35128800-35132600	Enhancers	Osteobl	bone
4	chr5:35129000-35131000	Enhancers	Stomach Mucosa	stomach
5	chr5:35129000-35131200	Enhancers	Liver	Liver
6	chr5:35129200-35132000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:35129400-35131200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:35129400-35131800	Enhancers	NHLF	lung
9	chr5:35129400-35132400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:35129800-35131000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:35129800-35131000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr5:35129800-35131000	Strong transcription	Fetal Intestine Small	intestine
13	chr5:35129800-35131200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr5:35129800-35131200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr5:35129800-35131200	Enhancers	Pancreas	Pancrea
16	chr5:35129800-35131200	Bivalent Enhancer	Dnd41	blood
17	chr5:35129800-35132200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:35130000-35131000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:35130000-35131200	Bivalent Enhancer	Fetal Thymus	thymus
20	chr5:35130200-35131000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr5:35130200-35131200	Strong transcription	Fetal Intestine Large	intestine
22	chr5:35130200-35132600	Enhancers	NHDF-Ad	bronchial
23	chr5:35130200-35132800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:35130200-35133200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr5:35130200-35135400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:35130400-35131600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:35130400-35131600	Weak transcription	NH-A	brain
28	chr5:35130400-35131800	Weak transcription	HepG2	liver
29	chr5:35130600-35131000	Bivalent Enhancer	Primary T cells from cord blood	blood
30	chr5:35130600-35131600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:35130600-35131800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:35130600-35135400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr5:35130600-35135400	Weak transcription	Placenta	Placenta
34	chr5:35130600-35135400	Weak transcription	Ovary	ovary
35	chr5:35130600-35136200	Weak transcription	NHEK	skin
36	chr5:35130800-35131000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr5:35130800-35134600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr5:35130800-35135000	Weak transcription	Rectal Mucosa Donor 31	rectum

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