Variant report

Variant	rs4455534
Chromosome Location	chr5:35109153-35109154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10078077	0.93[EUR][1000 genomes]
rs1039430	0.93[EUR][1000 genomes]
rs1039431	0.93[EUR][1000 genomes]
rs10434586	0.93[EUR][1000 genomes]
rs13156190	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181490	0.93[EUR][1000 genomes]
rs13181536	0.90[EUR][1000 genomes]
rs13181984	0.93[EUR][1000 genomes]
rs13182185	0.93[EUR][1000 genomes]
rs13182275	0.93[EUR][1000 genomes]
rs1846995	0.93[EUR][1000 genomes]
rs1966571	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2018170	0.93[EUR][1000 genomes]
rs2047741	0.90[EUR][1000 genomes]
rs2062699	0.93[EUR][1000 genomes]
rs249536	0.83[AMR][1000 genomes]
rs249537	0.83[AMR][1000 genomes]
rs2914110	0.93[EUR][1000 genomes]
rs2914112	0.93[EUR][1000 genomes]
rs2914113	0.92[EUR][1000 genomes]
rs2914115	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2962085	0.93[EUR][1000 genomes]
rs2962087	0.93[EUR][1000 genomes]
rs2962089	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2962090	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2962092	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2962093	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2962095	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2962096	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2962097	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2962098	0.92[EUR][1000 genomes]
rs2962099	0.92[EUR][1000 genomes]
rs2962100	0.92[EUR][1000 genomes]
rs2962103	0.90[EUR][1000 genomes]
rs2962104	0.93[EUR][1000 genomes]
rs2962105	0.93[EUR][1000 genomes]
rs2962106	0.93[EUR][1000 genomes]
rs2962108	0.93[EUR][1000 genomes]
rs2962110	0.93[EUR][1000 genomes]
rs2962111	0.93[EUR][1000 genomes]
rs2962113	0.93[EUR][1000 genomes]
rs34376897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs37382	0.83[AMR][1000 genomes]
rs37383	0.83[AMR][1000 genomes]
rs37384	0.83[AMR][1000 genomes]
rs37385	0.83[AMR][1000 genomes]
rs37386	0.83[AMR][1000 genomes]
rs4295366	0.93[EUR][1000 genomes]
rs4333296	0.93[EUR][1000 genomes]
rs4343815	0.90[EUR][1000 genomes]
rs4370254	0.93[EUR][1000 genomes]
rs4403155	0.93[EUR][1000 genomes]
rs4703392	0.93[EUR][1000 genomes]
rs59336322	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451180	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67378061	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7721935	0.93[EUR][1000 genomes]
rs954286	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35088800-35114000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35089800-35113800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35096600-35114400	Weak transcription	Stomach Mucosa	stomach
4	chr5:35101600-35110400	Weak transcription	Placenta	Placenta
5	chr5:35105200-35113800	Weak transcription	Fetal Intestine Small	intestine
6	chr5:35105400-35114000	Weak transcription	Fetal Intestine Large	intestine
7	chr5:35105600-35115400	Weak transcription	HepG2	liver

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