Variant report

Variant	rs1609785
Chromosome Location	chr5:35151301-35151302
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:35150298..35152225-chr5:35165888..35167946,2	MCF-7	breast:
2	chr5:35146899..35149720-chr5:35150501..35153233,2	MCF-7	breast:
3	chr3:64197554..64198501-chr5:35150624..35151618,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10059483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10067752	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039431	0.80[CHB][hapmap]
rs10434586	1.00[CEU][hapmap]
rs10447139	0.80[CHB][hapmap]
rs13164310	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13181490	0.80[CHB][hapmap]
rs13182185	0.86[CHB][hapmap]
rs1587605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1846996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2018170	0.80[CHB][hapmap]
rs249529	0.80[CHB][hapmap]
rs249531	0.80[CHB][hapmap]
rs2914107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2914108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2914109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2914112	0.80[CHB][hapmap]
rs2962084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2962086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2962088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2962089	1.00[CEU][hapmap]
rs2962090	0.80[CHB][hapmap]
rs2962091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2962093	0.80[CHB][hapmap]
rs2962095	0.80[CHB][hapmap]
rs2962096	0.80[CHB][hapmap]
rs2962097	1.00[CEU][hapmap]
rs2962098	0.80[CHB][hapmap]
rs2962099	0.80[CHB][hapmap]
rs2962106	0.80[CHB][hapmap]
rs2962112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2962113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs35194391	0.94[ASN][1000 genomes]
rs35245967	0.96[ASN][1000 genomes]
rs35322400	0.97[EUR][1000 genomes]
rs36034794	0.96[ASN][1000 genomes]
rs4288098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4343815	0.80[CHB][hapmap]
rs4403155	0.80[CHB][hapmap]
rs4419570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4585417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703500	0.80[CHB][hapmap]
rs4703501	0.80[CHB][hapmap];0.97[EUR][1000 genomes]
rs59549906	0.92[EUR][1000 genomes]
rs60000687	0.86[EUR][1000 genomes]
rs6451181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66519917	0.92[EUR][1000 genomes]
rs66782186	0.92[EUR][1000 genomes]
rs66891287	0.92[EUR][1000 genomes]
rs66893440	0.86[EUR][1000 genomes]
rs66967212	0.92[EUR][1000 genomes]
rs72734538	0.86[EUR][1000 genomes]
rs73075084	0.92[EUR][1000 genomes]
rs73075086	0.92[EUR][1000 genomes]
rs73075098	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9292571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930067	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs930068	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35137000-35156600	Weak transcription	Placenta	Placenta
2	chr5:35137000-35157200	Weak transcription	Fetal Intestine Large	intestine
3	chr5:35137000-35158600	Weak transcription	Fetal Intestine Small	intestine
4	chr5:35147000-35151400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:35147000-35151600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:35150400-35151800	Enhancers	Brain Anterior Caudate	brain
7	chr5:35150600-35151800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr5:35151000-35151600	Enhancers	Ovary	ovary
9	chr5:35151000-35151800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:35151000-35152000	Enhancers	Brain Cingulate Gyrus	brain
11	chr5:35151000-35152000	Enhancers	Brain Substantia Nigra	brain
12	chr5:35151000-35152000	Enhancers	Fetal Muscle Leg	muscle
13	chr5:35151200-35151600	Weak transcription	Fetal Lung	lung
14	chr5:35151200-35152000	Enhancers	Brain Angular Gyrus	brain
15	chr5:35151200-35152000	Enhancers	NHDF-Ad	bronchial

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