Variant report

Variant	rs66893440
Chromosome Location	chr5:35113046-35113047
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10059483	0.86[EUR][1000 genomes]
rs10067752	0.82[EUR][1000 genomes]
rs1115964	1.00[ASN][1000 genomes]
rs13164310	0.86[EUR][1000 genomes]
rs1587605	0.86[EUR][1000 genomes]
rs1609785	0.86[EUR][1000 genomes]
rs2914107	0.86[EUR][1000 genomes]
rs2914108	0.86[EUR][1000 genomes]
rs2962084	0.86[EUR][1000 genomes]
rs2962086	0.86[EUR][1000 genomes]
rs2962088	0.86[EUR][1000 genomes]
rs2962112	0.86[EUR][1000 genomes]
rs34349127	1.00[ASN][1000 genomes]
rs34531945	1.00[ASN][1000 genomes]
rs35322400	0.84[EUR][1000 genomes]
rs4288098	0.86[EUR][1000 genomes]
rs4419570	0.86[EUR][1000 genomes]
rs4585417	0.86[EUR][1000 genomes]
rs4703501	0.84[EUR][1000 genomes]
rs55687280	1.00[ASN][1000 genomes]
rs59549906	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60000687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451181	0.86[EUR][1000 genomes]
rs66519917	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66782186	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66891287	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66967212	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72732874	1.00[ASN][1000 genomes]
rs72734538	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075084	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075086	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075098	0.86[EUR][1000 genomes]
rs9292571	0.86[EUR][1000 genomes]
rs9292572	0.86[EUR][1000 genomes]
rs930067	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930068	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35088800-35114000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35089800-35113800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35096600-35114400	Weak transcription	Stomach Mucosa	stomach
4	chr5:35105200-35113800	Weak transcription	Fetal Intestine Small	intestine
5	chr5:35105400-35114000	Weak transcription	Fetal Intestine Large	intestine
6	chr5:35105600-35115400	Weak transcription	HepG2	liver
7	chr5:35111400-35114000	Weak transcription	Liver	Liver
8	chr5:35111400-35114000	Weak transcription	Placenta	Placenta
9	chr5:35112800-35129800	Weak transcription	Duodenum Mucosa	Duodenum

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