Variant report

Variant	rs55687280
Chromosome Location	chr5:35011155-35011156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1115964	1.00[ASN][1000 genomes]
rs34349127	1.00[ASN][1000 genomes]
rs34531945	1.00[ASN][1000 genomes]
rs34852912	1.00[ASN][1000 genomes]
rs59549906	1.00[ASN][1000 genomes]
rs60000687	1.00[ASN][1000 genomes]
rs66519917	1.00[ASN][1000 genomes]
rs66782186	1.00[ASN][1000 genomes]
rs66891287	1.00[ASN][1000 genomes]
rs66893440	1.00[ASN][1000 genomes]
rs66967212	1.00[ASN][1000 genomes]
rs72732874	1.00[ASN][1000 genomes]
rs72734538	1.00[ASN][1000 genomes]
rs73075084	1.00[ASN][1000 genomes]
rs73075086	1.00[ASN][1000 genomes]
rs930067	1.00[ASN][1000 genomes]
rs930068	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028968	chr5:34945122-35060319	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv462120	chr5:34948532-35060319	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv597810	chr5:34948532-35060319	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:34995400-35014800	Weak transcription	Fetal Intestine Large	intestine
2	chr5:35006800-35011600	Strong transcription	Liver	Liver
3	chr5:35010400-35015200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:35010800-35011200	Flanking Active TSS	Fetal Heart	heart
5	chr5:35011000-35011200	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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