Variant report

Variant	rs34531945
Chromosome Location	chr5:34973719-34973720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1115964	1.00[ASN][1000 genomes]
rs34349127	1.00[ASN][1000 genomes]
rs34852912	1.00[ASN][1000 genomes]
rs55687280	1.00[ASN][1000 genomes]
rs59549906	1.00[ASN][1000 genomes]
rs60000687	1.00[ASN][1000 genomes]
rs66519917	1.00[ASN][1000 genomes]
rs66782186	1.00[ASN][1000 genomes]
rs66891287	1.00[ASN][1000 genomes]
rs66893440	1.00[ASN][1000 genomes]
rs66967212	1.00[ASN][1000 genomes]
rs72732874	1.00[ASN][1000 genomes]
rs72734538	1.00[ASN][1000 genomes]
rs73075084	1.00[ASN][1000 genomes]
rs73075086	1.00[ASN][1000 genomes]
rs930067	1.00[ASN][1000 genomes]
rs930068	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015535	chr5:34798601-34981782	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv1021593	chr5:34798601-34983146	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
3	nsv1028968	chr5:34945122-35060319	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv462120	chr5:34948532-35060319	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv597810	chr5:34948532-35060319	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:34951200-34976400	Weak transcription	Psoas Muscle	Psoas
2	chr5:34952200-34986200	Weak transcription	Aorta	Aorta
3	chr5:34952400-34976200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:34953000-34974800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:34953600-34976200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:34967200-34976200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:34967400-34976200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:34967400-34976400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:34973400-34976400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:34973600-34973800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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