Variant report

Variant	rs4288098
Chromosome Location	chr5:35145748-35145749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:35121026..35123400-chr5:35145194..35147687,3	MCF-7	breast:
2	chr20:52482329..52484682-chr5:35145735..35147970,2	MCF-7	breast:
3	chr5:35145603..35148365-chr5:35152663..35155547,2	MCF-7	breast:
4	chr5:35124404..35125990-chr5:35143977..35145766,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10059483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10067752	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10434586	1.00[CEU][hapmap]
rs13164310	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13182185	0.86[CHB][hapmap]
rs1587605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1609785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1846996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2914107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2914108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2914109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2962084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2962086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2962088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2962089	1.00[CEU][hapmap]
rs2962091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2962097	1.00[CEU][hapmap]
rs2962112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2962113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs35194391	0.94[ASN][1000 genomes]
rs35245967	0.96[ASN][1000 genomes]
rs35322400	0.97[EUR][1000 genomes]
rs36034794	0.96[ASN][1000 genomes]
rs4419570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4585417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703501	0.97[EUR][1000 genomes]
rs59549906	0.92[EUR][1000 genomes]
rs60000687	0.86[EUR][1000 genomes]
rs6451181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66519917	0.92[EUR][1000 genomes]
rs66782186	0.92[EUR][1000 genomes]
rs66891287	0.92[EUR][1000 genomes]
rs66893440	0.86[EUR][1000 genomes]
rs66967212	0.92[EUR][1000 genomes]
rs72734538	0.86[EUR][1000 genomes]
rs73075084	0.92[EUR][1000 genomes]
rs73075086	0.92[EUR][1000 genomes]
rs73075098	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9292571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930067	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs930068	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35137000-35156600	Weak transcription	Placenta	Placenta
2	chr5:35137000-35157200	Weak transcription	Fetal Intestine Large	intestine
3	chr5:35137000-35158600	Weak transcription	Fetal Intestine Small	intestine
4	chr5:35142800-35147000	Enhancers	NHDF-Ad	bronchial
5	chr5:35143800-35147000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:35144000-35145800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:35144800-35147200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:35145200-35146200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:35145400-35146200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr5:35145400-35146600	Enhancers	Osteobl	bone
11	chr5:35145600-35145800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:35145600-35146200	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links