Variant report

Variant	rs2962112
Chromosome Location	chr5:35138545-35138546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:35138370-35138819	SK-N-SH	brain:	n/a	n/a
2	CEBPB	chr5:35138224-35138686	IMR90	lung:	n/a	n/a
3	GATA3	chr5:35138303-35138895	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
PRLR	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10059483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10067752	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1039431	0.80[CHB][hapmap]
rs10434586	1.00[CEU][hapmap]
rs10447139	0.80[CHB][hapmap]
rs13164310	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181490	0.80[CHB][hapmap]
rs13182185	0.86[CHB][hapmap]
rs1587605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1609785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2018170	0.80[CHB][hapmap]
rs249529	0.80[CHB][hapmap]
rs249531	0.80[CHB][hapmap]
rs2914107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2914112	0.80[CHB][hapmap]
rs2962084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962089	1.00[CEU][hapmap]
rs2962090	0.80[CHB][hapmap]
rs2962091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2962093	0.80[CHB][hapmap]
rs2962095	0.80[CHB][hapmap]
rs2962096	0.80[CHB][hapmap]
rs2962097	1.00[CEU][hapmap]
rs2962098	0.80[CHB][hapmap]
rs2962099	0.80[CHB][hapmap]
rs2962106	0.80[CHB][hapmap]
rs2962113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs35194391	0.97[ASN][1000 genomes]
rs35245967	0.99[ASN][1000 genomes]
rs35322400	0.97[EUR][1000 genomes]
rs36034794	0.99[ASN][1000 genomes]
rs4288098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4343815	0.80[CHB][hapmap]
rs4403155	0.80[CHB][hapmap]
rs4419570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4703500	0.80[CHB][hapmap]
rs4703501	0.80[CHB][hapmap];0.97[EUR][1000 genomes]
rs59549906	0.92[EUR][1000 genomes]
rs60000687	0.86[EUR][1000 genomes]
rs6451181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66519917	0.92[EUR][1000 genomes]
rs66782186	0.92[EUR][1000 genomes]
rs66891287	0.92[EUR][1000 genomes]
rs66893440	0.86[EUR][1000 genomes]
rs66967212	0.92[EUR][1000 genomes]
rs72734538	0.86[EUR][1000 genomes]
rs73075084	0.92[EUR][1000 genomes]
rs73075086	0.92[EUR][1000 genomes]
rs73075098	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9292572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs930067	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs930068	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35133200-35139200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:35134600-35139200	Enhancers	NHDF-Ad	bronchial
3	chr5:35134800-35139200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr5:35135400-35139400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:35136000-35138800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:35136000-35139000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:35136000-35139000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:35136000-35139000	Enhancers	HSMM	muscle
9	chr5:35136000-35139000	Enhancers	Osteobl	bone
10	chr5:35137000-35156600	Weak transcription	Placenta	Placenta
11	chr5:35137000-35157200	Weak transcription	Fetal Intestine Large	intestine
12	chr5:35137000-35158600	Weak transcription	Fetal Intestine Small	intestine
13	chr5:35137200-35139200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:35137600-35139000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:35137800-35138600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:35138400-35138600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:35138400-35138600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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