Variant report

Variant	rs2914109
Chromosome Location	chr5:35131291-35131292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10059483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10067752	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1039431	0.80[CHB][hapmap]
rs10434586	1.00[CEU][hapmap]
rs10447139	0.80[CHB][hapmap]
rs13164310	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181490	0.80[CHB][hapmap]
rs13182185	0.86[CHB][hapmap]
rs1587605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1609785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2018170	0.80[CHB][hapmap]
rs249529	0.80[CHB][hapmap]
rs249531	0.80[CHB][hapmap]
rs2914107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914112	0.80[CHB][hapmap]
rs2962084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962087	0.86[AFR][1000 genomes]
rs2962088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962089	1.00[CEU][hapmap]
rs2962090	0.80[CHB][hapmap]
rs2962091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2962093	0.80[CHB][hapmap]
rs2962095	0.80[CHB][hapmap]
rs2962096	0.80[CHB][hapmap]
rs2962097	1.00[CEU][hapmap]
rs2962098	0.80[CHB][hapmap]
rs2962099	0.80[CHB][hapmap]
rs2962106	0.80[CHB][hapmap]
rs2962112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs35194391	0.97[ASN][1000 genomes]
rs35245967	0.99[ASN][1000 genomes]
rs35322400	0.95[EUR][1000 genomes]
rs36034794	0.99[ASN][1000 genomes]
rs4288098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4343815	0.80[CHB][hapmap]
rs4403155	0.80[CHB][hapmap]
rs4419570	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4703500	0.80[CHB][hapmap]
rs4703501	0.80[CHB][hapmap];0.95[EUR][1000 genomes]
rs59549906	0.89[EUR][1000 genomes]
rs60000687	0.84[EUR][1000 genomes]
rs6451181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66519917	0.89[EUR][1000 genomes]
rs66782186	0.89[EUR][1000 genomes]
rs66891287	0.89[EUR][1000 genomes]
rs66893440	0.84[EUR][1000 genomes]
rs66967212	0.89[EUR][1000 genomes]
rs72734538	0.84[EUR][1000 genomes]
rs73075084	0.89[EUR][1000 genomes]
rs73075086	0.89[EUR][1000 genomes]
rs73075098	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9292572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs930067	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs930068	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35127200-35132200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:35128200-35136400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:35128800-35132600	Enhancers	Osteobl	bone
4	chr5:35129200-35132000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:35129400-35131800	Enhancers	NHLF	lung
6	chr5:35129400-35132400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:35129800-35132200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:35130200-35132600	Enhancers	NHDF-Ad	bronchial
9	chr5:35130200-35132800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:35130200-35133200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:35130200-35135400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:35130400-35131600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:35130400-35131600	Weak transcription	NH-A	brain
14	chr5:35130400-35131800	Weak transcription	HepG2	liver
15	chr5:35130600-35131600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:35130600-35131800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:35130600-35135400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:35130600-35135400	Weak transcription	Placenta	Placenta
19	chr5:35130600-35135400	Weak transcription	Ovary	ovary
20	chr5:35130600-35136200	Weak transcription	NHEK	skin
21	chr5:35130800-35134600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:35130800-35135000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr5:35131000-35131800	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr5:35131200-35133000	Weak transcription	Liver	Liver
25	chr5:35131200-35133200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:35131200-35134200	Weak transcription	Fetal Intestine Large	intestine
27	chr5:35131200-35135400	Weak transcription	Pancreas	Pancrea

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