Variant report

Variant	rs57718718
Chromosome Location	chr1:56653592-56653593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRKAA2-10	chr1:56653508-56653602	NONHSAT003436

rs_ID	r²[population]
rs55719906	1.00[AFR][1000 genomes]
rs59252704	1.00[AFR][1000 genomes]
rs74072806	1.00[AFR][1000 genomes]
rs74072811	1.00[AFR][1000 genomes]
rs74072845	1.00[AFR][1000 genomes]
rs74072850	1.00[AFR][1000 genomes]
rs74072857	1.00[AFR][1000 genomes]
rs74072863	1.00[AFR][1000 genomes]
rs74072868	1.00[AFR][1000 genomes]
rs74072871	1.00[AFR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56645600-56654000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56646800-56653800	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:56647000-56655800	Weak transcription	Aorta	Aorta
4	chr1:56647200-56655000	Weak transcription	Fetal Kidney	kidney
5	chr1:56647600-56653800	Weak transcription	NHDF-Ad	bronchial
6	chr1:56647800-56654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:56647800-56654200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:56647800-56654600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:56649800-56653800	Weak transcription	HepG2	liver
10	chr1:56651800-56654000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:56651800-56654400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:56652000-56654800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr1:56652200-56653800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:56652200-56653800	Weak transcription	Fetal Stomach	stomach
15	chr1:56652200-56654000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:56652200-56654200	Weak transcription	Brain Substantia Nigra	brain
17	chr1:56652200-56654400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:56652200-56654600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:56652200-56656000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:56652400-56654200	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:56653000-56653600	Enhancers	Fetal Lung	lung
22	chr1:56653000-56657400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:56653000-56658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:56653400-56654400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links