Variant report

Variant	rs577357723
Chromosome Location	chr1:79545963-79545964
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv546619	chr1:79233493-79614989	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2830430	chr1:79310760-79555593	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1010441	chr1:79320299-79555315	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv546630	chr1:79506410-79557804	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv34074	chr1:79513444-79585652	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv546631	chr1:79518810-79614989	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv546632	chr1:79534138-79594157	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1009913	chr1:79540957-79616947	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1007013	chr1:79540957-79619725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1005743	chr1:79540957-79621702	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79544800-79548600	Enhancers	HUVEC	blood vessel
2	chr1:79545000-79546000	Enhancers	Adipose Nuclei	Adipose
3	chr1:79545200-79546000	Enhancers	HMEC	breast
4	chr1:79545200-79546000	Enhancers	NH-A	brain
5	chr1:79545200-79546000	Enhancers	NHDF-Ad	bronchial
6	chr1:79545200-79546200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:79545200-79546200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:79545200-79546600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:79545200-79546600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:79545200-79546600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:79545400-79546000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr1:79545400-79546000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr1:79545400-79546000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:79545400-79546000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr1:79545400-79546000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:79545400-79546000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:79545400-79546000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:79545400-79546000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr1:79545400-79546000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:79545400-79546000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:79545400-79546000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:79545400-79546000	Enhancers	Hela-S3	cervix
23	chr1:79545400-79546000	Enhancers	HSMM	muscle
24	chr1:79545400-79546000	Enhancers	HSMMtube	muscle
25	chr1:79545400-79546000	Enhancers	NHLF	lung
26	chr1:79545400-79546000	Enhancers	Osteobl	bone
27	chr1:79545600-79546000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr1:79545600-79546000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:79545600-79546000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:79545600-79546000	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr1:79545600-79546000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:79545600-79546000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:79545600-79546000	Enhancers	Spleen	Spleen

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