Variant report

Variant	rs57737203
Chromosome Location	chr2:55268191-55268192
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55267799..55270095-chr2:55276037..55279766,5	MCF-7	breast:
2	chr2:55257553..55263983-chr2:55266645..55270936,7	K562	blood:
3	chr2:55255325..55257378-chr2:55267721..55270534,4	MCF-7	breast:
4	chr2:55245814..55247960-chr2:55267490..55269701,2	K562	blood:
5	chr2:55245145..55247960-chr2:55267490..55269822,3	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1012603	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10496040	0.84[EUR][1000 genomes]
rs17046514	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17046518	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17046583	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17046643	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17046658	0.84[EUR][1000 genomes]
rs2028728	0.94[EUR][1000 genomes]
rs2241958	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2255026	0.83[AFR][1000 genomes]
rs2580771	0.83[AFR][1000 genomes]
rs2588515	0.83[AFR][1000 genomes]
rs2588516	0.83[AFR][1000 genomes]
rs2588522	0.83[AFR][1000 genomes]
rs2919126	0.83[AFR][1000 genomes]
rs34378852	0.83[AFR][1000 genomes]
rs4672006	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4672009	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4672011	0.83[EUR][1000 genomes]
rs60553807	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60989687	0.81[EUR][1000 genomes]
rs6545464	0.83[AFR][1000 genomes]
rs6734314	0.83[AFR][1000 genomes]
rs6739210	0.83[AFR][1000 genomes]
rs73936818	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73936829	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57737203	RTN4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55237600-55272600	Weak transcription	Fetal Stomach	stomach
2	chr2:55241000-55272400	Weak transcription	Fetal Kidney	kidney
3	chr2:55250400-55271000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:55250400-55274000	Weak transcription	Pancreas	Pancrea
5	chr2:55253400-55273000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:55254200-55269800	Weak transcription	Aorta	Aorta
7	chr2:55254200-55270400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:55255400-55272600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:55255400-55272600	Weak transcription	Fetal Intestine Small	intestine
10	chr2:55256400-55270400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:55259000-55272800	Weak transcription	Small Intestine	intestine
12	chr2:55259200-55272800	Weak transcription	Fetal Heart	heart
13	chr2:55259400-55275200	Weak transcription	Esophagus	oesophagus
14	chr2:55260800-55270400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr2:55260800-55271200	Weak transcription	Lung	lung
16	chr2:55260800-55271200	Weak transcription	Right Atrium	heart
17	chr2:55260800-55272000	Weak transcription	NH-A	brain
18	chr2:55260800-55272400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:55260800-55273200	Weak transcription	Psoas Muscle	Psoas
20	chr2:55261200-55273000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr2:55261400-55272800	Weak transcription	Thymus	Thymus
22	chr2:55261600-55269400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr2:55261600-55271200	Weak transcription	Ovary	ovary
24	chr2:55262600-55270200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr2:55264600-55268600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr2:55264800-55268400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr2:55264800-55270200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:55264800-55271200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr2:55265000-55268400	Weak transcription	Colon Smooth Muscle	Colon
30	chr2:55265000-55270400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr2:55265600-55270400	Enhancers	Brain Hippocampus Middle	brain
32	chr2:55266200-55268400	Weak transcription	HSMM	muscle
33	chr2:55266200-55268600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr2:55266200-55268600	Weak transcription	HepG2	liver
35	chr2:55266200-55269000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr2:55266200-55269200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr2:55266200-55270000	Weak transcription	Hela-S3	cervix
38	chr2:55266200-55271400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr2:55266200-55272400	Weak transcription	HMEC	breast
40	chr2:55266200-55272600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr2:55266200-55273600	Weak transcription	Primary B cells from cord blood	blood
42	chr2:55266400-55268400	Weak transcription	NHDF-Ad	bronchial
43	chr2:55266400-55269200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:55266400-55269200	Weak transcription	K562	blood
45	chr2:55266400-55270200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr2:55266400-55270200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr2:55266400-55272000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:55266400-55272600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr2:55266400-55272600	Weak transcription	Fetal Muscle Leg	muscle
50	chr2:55266600-55268600	Weak transcription	HUVEC	blood vessel

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