Variant report

Variant	rs57740257
Chromosome Location	chr5:58760583-58760584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56975405	0.94[AFR][1000 genomes]
rs7705360	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1028022	chr5:58673780-58786468	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv598254	chr5:58715782-58923601	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv881706	chr5:58730111-58865857	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv881707	chr5:58741491-58784102	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58731800-58764800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:58753600-58767400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:58754600-58760800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:58754600-58780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:58755600-58761400	Weak transcription	Fetal Brain Female	brain
6	chr5:58755800-58762600	Weak transcription	Fetal Intestine Large	intestine
7	chr5:58756800-58761600	Weak transcription	Liver	Liver
8	chr5:58756800-58766800	Weak transcription	Gastric	stomach
9	chr5:58756800-58775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:58756800-58775600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:58757000-58762200	Weak transcription	Fetal Brain Male	brain
12	chr5:58757600-58762400	Weak transcription	Fetal Intestine Small	intestine
13	chr5:58758600-58762200	Weak transcription	Psoas Muscle	Psoas
14	chr5:58758800-58761800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:58759000-58761000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:58759600-58760800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:58759600-58760800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:58759600-58761800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:58759600-58762200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:58759600-58762200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:58759600-58762200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:58759600-58768000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:58760400-58760800	Flanking Active TSS	A549	lung

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