Variant report

Variant	rs57744564
Chromosome Location	chr10:97850211-97850212
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr10:97849582-97850260	K562	blood:	n/a	chr10:97849619-97849629
2	PAX5	chr10:97849273-97850269	GM12878	blood:	n/a	n/a
3	BCL3	chr10:97849368-97850350	A549	lung:	n/a	chr10:97850090-97850099
4	TEAD4	chr10:97849606-97850395	HepG2	liver:	n/a	n/a
5	ATF2	chr10:97849254-97850435	GM12878	blood:	n/a	n/a
6	BATF	chr10:97849805-97850246	GM12878	blood:	n/a	n/a
7	POLR2A	chr10:97849322-97850780	HL-60	blood:	n/a	n/a
8	STAT5A	chr10:97849476-97850232	K562	blood:	n/a	chr10:97850054-97850063 chr10:97850049-97850069 chr10:97850055-97850064 chr10:97850055-97850063
9	POLR2A	chr10:97849296-97850318	K562	blood:	n/a	n/a
10	POLR2A	chr10:97848882-97850709	HepG2	liver:	n/a	n/a
11	PML	chr10:97849266-97850359	K562	blood:	n/a	n/a
12	TBP	chr10:97849373-97850397	GM12878	blood:	n/a	n/a
13	YY1	chr10:97849345-97850295	SK-N-SH_RA	brain:	n/a	n/a
14	TBP	chr10:97849366-97850279	HepG2	liver:	n/a	n/a
15	STAT5A	chr10:97849569-97850311	GM12878	blood:	n/a	chr10:97850054-97850063 chr10:97850049-97850069 chr10:97850055-97850064 chr10:97850055-97850063
16	TAF1	chr10:97849371-97850213	K562	blood:	n/a	n/a
17	POLR2A	chr10:97849301-97850700	GM12878	blood:	n/a	n/a
18	POLR2A	chr10:97849329-97850294	GM12891	blood:	n/a	n/a
19	POLR2A	chr10:97849301-97850587	A549	lung:	n/a	n/a
20	EP300	chr10:97849807-97850226	HepG2	liver:	n/a	n/a
21	E2F6	chr10:97849364-97850534	K562	blood:	n/a	chr10:97849674-97849681 chr10:97849674-97849681 chr10:97849674-97849681
22	GABPA	chr10:97849006-97850635	MCF-7	breast:	n/a	n/a
23	SIX5	chr10:97849277-97850401	A549	lung:	n/a	n/a
24	TCF12	chr10:97849889-97850214	GM12878	blood:	n/a	n/a
25	GABPA	chr10:97849218-97850522	HL-60	blood:	n/a	n/a
26	ELK4	chr10:97849576-97850212	HEK293	kidney:	n/a	chr10:97849955-97849966 chr10:97849993-97850004
27	MAX	chr10:97849283-97850409	ECC-1	luminal epithelium:	n/a	chr10:97850384-97850393
28	YY1	chr10:97849489-97850362	NT2-D1	testis:	n/a	n/a
29	ETS1	chr10:97849436-97850255	GM12878	blood:	n/a	chr10:97850058-97850068
30	POLR2A	chr10:97849326-97850284	A549	lung:	n/a	n/a
31	SIN3AK20	chr10:97849736-97850380	A549	lung:	n/a	n/a
32	POLR2A	chr10:97849386-97850214	A549	lung:	n/a	n/a
33	BHLHE40	chr10:97849366-97850596	HepG2	liver:	n/a	chr10:97850079-97850095
34	MAZ	chr10:97849343-97850359	K562	blood:	n/a	n/a
35	RELA	chr10:97849387-97850437	GM18951	blood:	n/a	n/a
36	TAF1	chr10:97849221-97850499	ECC-1	luminal epithelium:	n/a	n/a
37	TAF1	chr10:97849278-97850399	A549	lung:	n/a	n/a
38	POLR2A	chr10:97849242-97850679	GM12892	blood:	n/a	n/a
39	ATF3	chr10:97849651-97850218	A549	lung:	n/a	chr10:97850089-97850098
40	MAX	chr10:97849344-97850267	SK-N-SH	brain:	n/a	n/a
41	POLR2A	chr10:97849317-97850491	K562	blood:	n/a	n/a
42	POLR2A	chr10:97849340-97850222	HepG2	liver:	n/a	n/a
43	IRF1	chr10:97849356-97850283	K562	blood:	n/a	chr10:97849679-97849699
44	POLR2A	chr10:97849162-97850783	MCF10A-Er-Src	breast:	n/a	n/a
45	POLR2A	chr10:97849313-97850599	GM19099	blood:	n/a	n/a
46	ETS1	chr10:97849501-97850258	GM12878	blood:	n/a	chr10:97850058-97850068
47	POLR2A	chr10:97849287-97850680	GM12892	blood:	n/a	n/a
48	POLR2A	chr10:97849296-97850298	GM12878	blood:	n/a	n/a
49	CCNT2	chr10:97849427-97850489	K562	blood:	n/a	n/a
50	SMC3	chr10:97849413-97850351	GM12878	blood:	n/a	chr10:97850082-97850089

No.	Distal block	Cell Line	Cell type
1	chr10:97849316..97850266-chr10:97888828..97890559,6	MCF-7	breast:
2	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
3	chr1:180991526..180992387-chr10:97849546..97850515,2	Hela-S3	cervix:
4	chr10:97848038..97851071-chr10:97871743..97873669,3	MCF-7	breast:
5	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
6	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
7	chr10:97849403..97850506-chr10:97889252..97890588,8	NB4	blood:
8	chr10:97849924..97850474-chr10:97889791..97890684,2	MCF-7	breast:
9	chr10:97849360..97850496-chr10:97889363..97891052,12	MCF-7	breast:
10	chr10:97848840..97850347-chr10:98030578..98032838,2	MCF-7	breast:
11	chr10:97803257..97805604-chr10:97849531..97852092,3	MCF-7	breast:
12	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:
13	chr1:161719154..161719824-chr10:97849699..97850320,2	Hela-S3	cervix:
14	chr10:97849709..97850473-chr10:97889478..97890662,4	HCT-116	colon:
15	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
16	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNJ-4	chr10:97849288-97850240	NONHSAT015791

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENSG00000107443	Chromatin interaction
ENSG00000200728	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000095585	Chromatin interaction
ENSG00000135823	Chromatin interaction
ENSG00000081721	Chromatin interaction
ENSG00000177853	Chromatin interaction

rs_ID	r²[population]
rs56951868	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58051530	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58536989	1.00[AMR][1000 genomes]
rs58969446	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320997	1.00[AMR][1000 genomes]

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97849000-97850400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:97849000-97850400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:97849000-97850400	Active TSS	Fetal Brain Female	brain
4	chr10:97849000-97850400	Active TSS	Fetal Kidney	kidney
5	chr10:97849000-97850400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr10:97849000-97850600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:97849000-97850600	Active TSS	HSMMtube	muscle
8	chr10:97849000-97850800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:97849000-97850800	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr10:97849200-97850400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr10:97849200-97850400	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr10:97849200-97850400	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr10:97849200-97850400	Active TSS	Aorta	Aorta
14	chr10:97849200-97850400	Active TSS	Fetal Lung	lung
15	chr10:97849200-97850400	Active TSS	NHLF	lung
16	chr10:97849200-97850600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:97849200-97850600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:97849200-97850600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:97849200-97850600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:97849200-97850600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:97849200-97850600	Active TSS	Fetal Brain Male	brain
22	chr10:97849200-97850600	Active TSS	HSMM	muscle
23	chr10:97849200-97850600	Active TSS	NH-A	brain
24	chr10:97849200-97850800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr10:97849400-97850400	Active TSS	Esophagus	oesophagus
26	chr10:97849400-97850400	Active TSS	Lung	lung
27	chr10:97849400-97850400	Active TSS	Ovary	ovary
28	chr10:97849400-97850400	Active TSS	Right Ventricle	heart
29	chr10:97849400-97850400	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr10:97849400-97850400	Active TSS	Small Intestine	intestine
31	chr10:97849400-97850600	Active TSS	Gastric	stomach
32	chr10:97849600-97850600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:97849600-97850600	Active TSS	Muscle Satellite Cultured Cells	--
34	chr10:97849600-97850600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
35	chr10:97849600-97850800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:97849800-97850400	Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr10:97850000-97850400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:97850000-97850400	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr10:97850000-97850400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr10:97850000-97850600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
41	chr10:97850000-97850600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr10:97850000-97850600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr10:97850000-97850600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:97850000-97850600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:97850000-97850600	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr10:97850000-97850600	ZNF genes & repeats	Placenta	Placenta
47	chr10:97850000-97850600	Flanking Active TSS	HMEC	breast
48	chr10:97850000-97850600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr10:97850000-97850800	Flanking Active TSS	Dnd41	blood
50	chr10:97850200-97850400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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