Variant report

Variant	rs73320997
Chromosome Location	chr10:97968328-97968329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IKZF1	chr10:97968074-97968361	GM12878	blood:	n/a	n/a
2	RUNX3	chr10:97967945-97968425	GM12878	blood:	n/a	n/a
3	BCLAF1	chr10:97967746-97968451	GM12878	blood:	n/a	chr10:97968047-97968055
4	EBF1	chr10:97967969-97968386	GM12878	blood:	n/a	chr10:97968149-97968162 chr10:97968149-97968160 chr10:97968151-97968161
5	EBF1	chr10:97967966-97968357	GM12878	blood:	n/a	chr10:97968149-97968162 chr10:97968149-97968160 chr10:97968151-97968161
6	POLR2A	chr10:97967736-97968996	GM12891	blood:	n/a	n/a
7	RUNX3	chr10:97967917-97968428	GM12878	blood:	n/a	n/a
8	PML	chr10:97967805-97968468	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
BLNK	TF binding region

rs_ID	r²[population]
rs56951868	1.00[AMR][1000 genomes]
rs57744564	1.00[AMR][1000 genomes]
rs58051530	1.00[AMR][1000 genomes]
rs58536989	1.00[AMR][1000 genomes]
rs58969446	1.00[AMR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach
4	chr10:97949600-97989200	Strong transcription	Liver	Liver
5	chr10:97950000-97969400	Weak transcription	Esophagus	oesophagus
6	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
7	chr10:97952200-97971800	Strong transcription	Primary B cells from cord blood	blood
8	chr10:97955400-97971800	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:97957600-97988400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:97958800-97971400	Strong transcription	Duodenum Mucosa	Duodenum
11	chr10:97958800-97976400	Strong transcription	Fetal Intestine Large	intestine
12	chr10:97959000-97988800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:97961000-97985600	Weak transcription	Aorta	Aorta
14	chr10:97962400-97970200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:97964000-97985800	Weak transcription	Stomach Mucosa	stomach
16	chr10:97965600-97974200	Weak transcription	Lung	lung
17	chr10:97965800-97998600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:97966400-97968400	Strong transcription	Placenta	Placenta
19	chr10:97967000-97976000	Strong transcription	Fetal Intestine Small	intestine
20	chr10:97967200-97977000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:97967400-97971400	Weak transcription	Adipose Nuclei	Adipose
22	chr10:97967400-97973200	Weak transcription	Gastric	stomach
23	chr10:97967400-97981000	Weak transcription	Colonic Mucosa	Colon
24	chr10:97967600-97969400	Weak transcription	Pancreas	Pancrea
25	chr10:97967600-97969400	Weak transcription	Spleen	Spleen
26	chr10:97967600-97990600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:97967800-97972600	Genic enhancers	GM12878-XiMat	blood
28	chr10:97968000-97968600	Genic enhancers	Rectal Mucosa Donor 29	rectum
29	chr10:97968200-97973000	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links