Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10518186	1.00[ASN][1000 genomes]
rs10518187	0.95[ASN][1000 genomes]
rs17002933	1.00[ASN][1000 genomes]
rs17002934	1.00[ASN][1000 genomes]
rs17002936	1.00[ASN][1000 genomes]
rs17002939	1.00[ASN][1000 genomes]
rs17002940	1.00[ASN][1000 genomes]
rs17002949	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17002950	1.00[ASN][1000 genomes]
rs17002955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17002961	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17002976	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1996390	1.00[ASN][1000 genomes]
rs4552489	1.00[ASN][1000 genomes]
rs4631075	1.00[ASN][1000 genomes]
rs4640694	1.00[ASN][1000 genomes]
rs56304889	1.00[ASN][1000 genomes]
rs56350977	1.00[ASN][1000 genomes]
rs56905033	1.00[ASN][1000 genomes]
rs57165692	1.00[ASN][1000 genomes]
rs57539827	1.00[ASN][1000 genomes]
rs57619651	1.00[ASN][1000 genomes]
rs58069750	0.98[ASN][1000 genomes]
rs58740255	1.00[ASN][1000 genomes]
rs58858744	1.00[ASN][1000 genomes]
rs59086902	1.00[ASN][1000 genomes]
rs59584338	1.00[ASN][1000 genomes]
rs59939614	0.90[ASN][1000 genomes]
rs60366235	1.00[ASN][1000 genomes]
rs72860603	1.00[ASN][1000 genomes]
rs72860604	1.00[ASN][1000 genomes]
rs72860615	1.00[ASN][1000 genomes]
rs72860619	1.00[ASN][1000 genomes]
rs72860622	1.00[ASN][1000 genomes]
rs72860623	1.00[ASN][1000 genomes]
rs72860640	1.00[ASN][1000 genomes]
rs7696002	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv520625	chr4:79002655-79071788	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79027000-79039400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:79039200-79039800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr4:79039200-79039800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:79039200-79039800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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